Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq39689 217 4e-53 seq35619 98.7 3e-17 >seq39689 Length=9188 Score = 217 bits (240), Expect = 4e-53 Identities = 280/383 (73%), Gaps = 9/383 (2%) Strand=Plus/Minus Query 1264 CTACGACCCGGCCTACGCGGGATCCATCCTCTACGGCTGGTGTCAGC-GCTCCTTCAACA 1322 ||| ||||| |||| | |||| |||| | |||||| || ||| | ||||| || Sbjct 7761 CTATGACCCCCCCTATGTGGGAAGCATCTTTGTCGGCTGCTG-CAGAAGAGACTTCAGCA 7703 Query 1323 AGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATCGCGGAGG 1382 |||| |||||||| ||||| |||||||| | |||| || |||||||||||||| || | Sbjct 7702 AGAGAAACACCGTGTGGCTGTACGGACCTGTGACGAAGGGAAAGACCAACATCGCTGAAG 7643 Query 1383 CCATCGCCCA-CACTGTG------CCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435 | || | | || || || || | |||||||| ||||||||||| || ||| Sbjct 7642 CTGTCTCTTTGCTCTTTGGTGGTCCCGCTTCATGGCTGCGTCAACTGGACCAACGAGAAC 7583 Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495 ||||||| | |||||| ||||| |||||| | ||||||||||||||||| || ||||| Sbjct 7582 TTTCCCTGCAGTGACTGCGTGGATAAAATGATTATTTGGTGGGAGGAGGGTAAAATGACA 7523 Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAG 1555 |||| | || ||| | |||||||| | ||||| ||||| |||||| |||| | ||| Sbjct 7522 TCCAAGATCGTCGAAGCTGCCAAGGCTCTTCTGGGTGGCTCTAAGGTGAGGGTGGGTCAA 7463 Query 1556 AAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAAC 1615 |||||||| || || ||| ||| | || || |||||| | || ||||| || || Sbjct 7462 AAATGTAAGGGATCCGTGTCAATAGATCCAACGCCAGTCATTATCACATCCAACGCAGAC 7403 Query 1616 ATGTGTGTGGTGGTGGATGGGAA 1638 |||||| |||| ||||| || Sbjct 7402 ATGTGTTCTGTGGCAGATGGTAA 7380 >seq35619 Length=136974 Score = 98.7 bits (108), Expect = 3e-17 Identities = 186/264 (70%), Gaps = 16/264 (6%) Strand=Plus/Plus Query 1230 aaaaCAGAATCTGGCAAATTTTTGAGAT-GAATGGCTACGACCCGGCCTACGCGGGATCC 1288 |||||| ||||| |||| | ||| | |||||| || ||||| |||||| |||| | Sbjct 88447 AAAACAAAATCTA-CAAAATACTGACTTTGAATGGATATGACCCAGCCTACATGGGAAGC 88505 Query 1289 ATCCTCTACGGCTGGTGTCAGC-GCTCCTTCAACAAGAGGAACACCGTCTGGCTCTACGG 1347 | || || ||||| ||| | |||||| || ||||||| | ||||| || || Sbjct 88506 ACATTCGTTGGGTGGTG-CAGAAGAGACTTCAATAACAGGAACATGATATGGCTGTATGG 88564 Query 1348 ACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCC--ATCGCCCACACTG---TGCCC 1402 ||| |||| || || || |||||||| || |||| |||| |||| ||||| Sbjct 88565 ACCTGCCAACACTGGGAAAACCAACATTGCTCAGGCTGTATCG-----ACTGCCATGCCC 88619 Query 1403 TTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTG-TGGACAA 1461 ||| | || || || || ||| | || || ||| ||| | ||| || ||| ||||||| Sbjct 88620 TTTCATGGGTGTGTCAATTGGTCAAAGGACAACCTTCAGTATAACGA-TGTCATGGACAA 88678 Query 1462 AATGCTCATTTGGTGGGAGGAGGG 1485 |||| | ||||||||||| ||||| Sbjct 88679 AATGGTTATTTGGTGGGAAGAGGG 88702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14732083222410