Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq39689 161 3e-36 seq35619 89.7 2e-14 >seq39689 Length=9188 Score = 161 bits (178), Expect = 3e-36 Identities = 265/376 (70%), Gaps = 11/376 (3%) Strand=Plus/Minus Query 1277 TCTTTCTCGGCTGGGCCCAGAAAA-AGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGG 1335 ||||| ||||||| | |||| | | ||| | ||| | |||||| | ||||||| || Sbjct 7735 TCTTTGTCGGCTGCTGC-AGAAGAGACTTCAGCAAGAGAAACACCGTGTGGCTGTACGGA 7677 Query 1336 CCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCC---CAC----GCCGTGCC 1388 || | || | || ||||||||||| || ||||| || | | | | || || Sbjct 7676 CCTGTGACGAAGGGAAAGACCAACATCGCTGAAGCTGTCTCTTTGCTCTTTGGTGGTCCC 7617 Query 1389 -CTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACA 1447 |||| | |||||||||||||||||||| ||||||||||||| || || ||||| || | Sbjct 7616 GCTTC-ATGGCTGCGTCAACTGGACCAACGAGAACTTTCCCTGCAGTGACTGCGTGGATA 7558 Query 1448 AGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGG 1507 | ||| | || |||||||||||||| || ||||| ||||| |||| || | ||||||| Sbjct 7557 AAATGATTATTTGGTGGGAGGAGGGTAAAATGACATCCAAGATCGTCGAAGCTGCCAAGG 7498 Query 1508 CCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCG 1567 | |||| || ||| |||||| | |||| ||||| || ||| |||| || | Sbjct 7497 CTCTTCTGGGTGGCTCTAAGGTGAGGGTGGGTCAAAAATGTAAGGGATCCGTGTCAATAG 7438 Query 1568 ACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACA 1627 | || || || || || |||| |||||| | ||||||| | ||| || || ||| Sbjct 7437 ATCCAACGCCAGTCATTATCACATCCAACGCAGACATGTGTTCTGTGGCAGATGGTAACT 7378 Query 1628 GCACCACCTTCGAGCA 1643 ||||| | ||||| Sbjct 7377 TGACCACGCTGGAGCA 7362 >seq35619 Length=136974 Score = 89.7 bits (98), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 1315 AACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAACATTGCGGAAGC--CA 1372 |||| || ||||||| ||| || |||| ||| || || ||||||||||| | || | Sbjct 88545 AACATGATATGGCTGTATGGACCTGCCAACACTGGGAAAACCAACATTGCTCAGGCTGTA 88604 Query 1373 TCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCA 1432 ||| | ||| ||||||| | || || ||||| ||| | || || ||| ||| | | Sbjct 88605 TCGAC--TGCCATGCCCTTTCATGGGTGTGTCAATTGGTCAAAGGACAACCTTCAGTATA 88662 Query 1433 ACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCA 1474 ||||| | | ||||| ||||| || |||||||| ||||||| Sbjct 88663 ACGATGTCATGGACAAAATGGTTATTTGGTGGGAAGAGGGCA 88704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14984706312180