Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq39689 183 8e-43 seq35619 89.7 1e-14 >seq39689 Length=9188 Score = 183 bits (202), Expect = 8e-43 Identities = 313/447 (70%), Gaps = 13/447 (3%) Strand=Plus/Minus Query 1106 GACATTACCCAGAACCGCATCTACCGCATCCTCGCTCTCAACGGCTACGACCCTGCCTAC 1165 ||||| ||||| ||| | |||||| || || || ||| ||| ||||| |||| Sbjct 7805 GACATCACCCAAAACAGGATCTACAAGATACTGACTTGGAACAACTATGACCCCCCCTAT 7746 Query 1166 GCCGGCTCCGTCTTTCTCGGCTGGGCT-CAGAAAA-AGTTCGGGAAACGCAACACCATCT 1223 | || | ||||| ||||||| || ||||| | | ||| | || | |||||| | | Sbjct 7745 GTGGGAAGCATCTTTGTCGGCTG--CTGCAGAAGAGACTTCAGCAAGAGAAACACCGTGT 7688 Query 1224 GGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCC---CAC- 1279 |||||| ||||| | || | || ||||||||||| || ||||| || | | | Sbjct 7687 GGCTGTACGGACCTGTGACGAAGGGAAAGACCAACATCGCTGAAGCTGTCTCTTTGCTCT 7628 Query 1280 ---GCCGTGCC-CTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGA 1335 | || || |||| | |||||||||||||||||||| ||||||||||||| || ||| Sbjct 7627 TTGGTGGTCCCGCTTC-ATGGCTGCGTCAACTGGACCAACGAGAACTTTCCCTGCAGTGA 7569 Query 1336 TTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGA 1395 ||||| || || ||| | || |||||||||||||| || ||||| ||||| |||| || Sbjct 7568 CTGCGTGGATAAAATGATTATTTGGTGGGAGGAGGGTAAAATGACATCCAAGATCGTCGA 7509 Query 1396 GTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTC 1455 | |||||||| |||| || ||| |||||| | |||| ||||| || ||| || Sbjct 7508 AGCTGCCAAGGCTCTTCTGGGTGGCTCTAAGGTGAGGGTGGGTCAAAAATGTAAGGGATC 7449 Query 1456 CGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGAT 1515 || || || || || || || || |||| |||||| | ||||||| | ||| Sbjct 7448 CGTGTCAATAGATCCAACGCCAGTCATTATCACATCCAACGCAGACATGTGTTCTGTGGC 7389 Query 1516 TGACGGGAACAGCACCACCTTCGAGCA 1542 || || ||| ||||| | ||||| Sbjct 7388 AGATGGTAACTTGACCACGCTGGAGCA 7362 >seq35619 Length=136974 Score = 89.7 bits (98), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 1214 AACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGC--CA 1271 |||| || ||||||| |||||| |||| ||| || || ||||||||||| | || | Sbjct 88545 AACATGATATGGCTGTATGGACCTGCCAACACTGGGAAAACCAACATTGCTCAGGCTGTA 88604 Query 1272 TCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCA 1331 ||| | ||| ||||||| | || || ||||| ||| | || || ||| ||| | | Sbjct 88605 TCGAC--TGCCATGCCCTTTCATGGGTGTGTCAATTGGTCAAAGGACAACCTTCAGTATA 88662 Query 1332 ATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCA 1373 | ||| | | ||||| ||||| || |||||||| ||||||| Sbjct 88663 ACGATGTCATGGACAAAATGGTTATTTGGTGGGAAGAGGGCA 88704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13935840825540