Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq26 80.6 7e-12 >seq26 Length=10188067 Score = 80.6 bits (88), Expect = 7e-12 Identities = 82/106 (77%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 3995 TTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAATGTTGTGGGAGGTACAGAAA 4054 ||||| | | ||||| || ||||| || ||| |||||| ||||| | |||||| Sbjct 9622535 TTCATCAGTCAATACTCCACTGGACAGGTCACT--TGAAATTGAATGGGAAATGCAGAAA 9622592 Query 4055 GAATCCTCCAAAAGATGGAATCCAGAAGTACAGTTTACTTCCAATT 4100 |||| ||||||||||||||||||||||| || |||| ||||||| Sbjct 9622593 GAATTTTCCAAAAGATGGAATCCAGAAGTTTAGCTTACCTCCAATT 9622638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14069568043630