Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_002361.1 Length=2037 Score E Sequences producing significant alignments: (Bits) Value seq20 129 7e-27 seq44695 80.6 3e-12 >seq20 Length=12106520 Score = 129 bits (142), Expect = 7e-27 Identities = 297/444 (67%), Gaps = 9/444 (2%) Strand=Plus/Minus Query 367 TGATGAGGACAATGAGAAGTACTGCTCTAAAGAGGGTAATGTGCTACTTACCC--TGGGC 424 |||||| || || ||| || ||||| ||||| ||| | ||| | || | |||| Sbjct 6117343 TGATGAAGATAAGGAGCAGCACTGCAGCAAAGAAGGTGACGTGTT--TTGCTGGGTGGGG 6117286 Query 425 ATTCCTGCG----AAGGGAAACCGGAGCGATCTCAGCGAGGCTGTTGCCGCGGTGAAAGC 480 | |||| | ||||| | || |||||| |||| | |||| ||| || |||| || Sbjct 6117285 GTCCCTGTGCGCCAAGGGCA-CCAGAGCGACCTCATGGGAGCTGCTGCTGCCATGAAGGC 6117227 Query 481 CGGAAGAGCAATGACCGAGGTCGCGCGAGACTTCAGTGAGATATACGTCAAATATGGGCG 540 | ||| |||| |||| | |||||||| ||| ||| |||||||| | ||||| Sbjct 6117226 CAGAACTAAAATGGCCGAAATGGCGCGAGAGTTCCCTGAAGCCTACGTCAAGTGGGGGCG 6117167 Query 541 TGGCTTGCGCGACCTGAAGCTGCTGATTGGTCAGCAGCCCCGTGACTTCAAAACGGAAGT 600 |||| | | || |||| || |||||||| ||||| | || | || |||| ||||| Sbjct 6117166 TGGCCTTAGAGATCTGAGACTCCTGATTGGCCAGCAACTGCGCAATTTTGAAACTGAAGT 6117107 Query 601 CATCGTCATCACGGGCCCGCCCGGTTGCGGGAAGAGCCGTTGGGCAGCTGACTACCCCGG 660 | ||| | | ||||| || ||| | || |||||||| ||||| || || || Sbjct 6117106 CTACGTGCTGATTGGCCCACCAGGTGGAGGCAAGAGCCGCTGGGCCGCCTCCTGAGAGGG 6117047 Query 661 AAGTAAATTCTACAAGATGAAGGGTGAATGGTGGGACGGGTACGACCACCAGGAAGTAGT 720 | |||| || || || || ||||||| | ||| | | ||| Sbjct 6117046 GTGACGGTTCTGTGAGGGCCGCGGGGAGGGGCGGGACGGCCATGACAGGGAAAACACAGT 6116987 Query 721 CATCATTGATGACTTCTACGGCTGGCTGCCCTTCTGTGAGCTGCTGCGTGTGACCGACCG 780 |||| ||||||||||| ||||||| | |||||||||||||| | |||||||||| Sbjct 6116986 AGTCATGGATGACTTCTATAGCTGGCTCCTGTTCTGTGAGCTGCTCTGGCTGACCGACCG 6116927 Query 781 GTACCCGCATAAGGTGCCCGTGAA 804 || || |||||||| ||| |||| Sbjct 6116926 CTATCCACATAAGGTCCCCATGAA 6116903 >seq44695 Length=704 Score = 80.6 bits (88), Expect = 3e-12 Identities = 175/262 (67%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 126 GAcccccccGCGAGGCTGCAGCAAAGCGATGGTGCTTCACTTTGAACAACCCCACTGAAG 185 ||||| ||| | || || ||| | || ||||||||||| ||| ||||| || || | Sbjct 429 GACCCGTCCGTGGCGCAGCCGCAGAACGCTGGTGCTTCACGCTGACTAACCCGACAGATG 488 Query 186 AAGAGATTAAGAGCCTGGAAACGTGGCTGGTGAGTGACTTCCACTATGCCATTGTGGGGA 245 | ||| | | | | || | | | | |||||| | || ||||| || ||||| | Sbjct 489 AGGAGGTCGACATCGTGAAGAGCTCCTTCCCGAGTGAGTACCCGTATGCGATCGTGGGTA 548 Query 246 AGGAGGTCGGGGAGCAGGGGACCCCGCATCTGCAAGGTTTTGTGCATCTAAAGCAGAAGA 305 || | |||||| |||||||| |||||| | ||||||||||| || ||||| Sbjct 549 CGGCAAAAGTGGAGCACGGGACCCCTCATCTGAAGGGTTTTGTGCAGACGAAAAAGAAGC 608 Query 306 AGCGGTTGCCGCAACTTAAGCAGCTTTTTAAGCGTGCGCATTGGGAGAAAGCGCGCGGCA 365 ||||| || || | || | | | | | ||||||||||| |||| || |||| Sbjct 609 AGCGGCTGAGCCATATGAAAGGGTTGCTGAGTAGAGCGCATTGGGAAAAAGTCCGTGGCA 668 Query 366 GTGATGAGGACAATGAGAAGTA 387 |||| || || | ||| || || Sbjct 669 GTGACGAAGATATTGAAAATTA 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6388869751200