Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_003410.1 Length=1952 Score E Sequences producing significant alignments: (Bits) Value seq5 251 9e-64 seq20 105 8e-20 >seq5 Length=74395783 Score = 251 bits (278), Expect = 9e-64 Identities = 182/220 (83%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 886 GCACCCGATCAACTATTAACACTCAGCCCCGAGGAAAAGAGCGTCTCGGAGGTGATTAAT 945 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2939084 GCACCCGACCAACTACAAACACTCAGCCCCGAGGAAAAGAGCGTCTCGGAGGTGATTAAT 2939143 Query 946 AAAAAATGCGCGCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTGAGACCGCGCG 1005 ||| |||| ||||| | |||||||||||||||| Sbjct 2939144 AAAGAATGTGCGCGAAGCGCGCGGCGAAGGCCGAAGGCCGAAGCCGCCTGAGACCGCGCG 2939203 Query 1006 AAGCGCGGCCAGGCGCGAGCGACAGCGAGCGGGCAGACCCCGGGTCCCCCCGGGGTCGCC 1065 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 2939204 AAGCGCGGCCAGGCGCGAGCGGCAGCGAGCGGGCAGACCCCGGGTCCCCCTGGGGTCGCC 2939263 Query 1066 CCCGTCGAGGGGCCGAAGGCCCCGAAGAAAGCTATTTTGT 1105 ||||||||||||||||||||||||||||||| |||| ||| Sbjct 2939264 CCCGTCGAGGGGCCGAAGGCCCCGAAGAAAGTTATTCTGT 2939303 Score = 98.7 bits (108), Expect = 1e-17 Identities = 59/62 (95%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 1044 CCCGGGTCCCCCCGGGGTCGCCCCCGTCGAGGGGCCGAAGGCCCCGAAGAAAGCTATTTT 1103 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 2937910 CCTGGGTCCCCCCGGGGTCGCCCCCGTCGAGGGGCCGAAGGCCCCGAAGAAAGTTATTCT 2937969 Query 1104 GT 1105 || Sbjct 2937970 GT 2937971 >seq20 Length=12106520 Score = 105 bits (116), Expect = 8e-20 Identities = 333/512 (65%), Gaps = 17/512 (3%) Strand=Plus/Minus Query 266 GCCCGTGGCTCAGATCATGATAACGAGGAGTATTGTAGTAAGGAAAACGACGTGATACTC 325 ||| |||| || ||| | ||||| ||| || | || || || ||| |||||| | | Sbjct 6117354 GCCTGTGGGTCTGATGAAGATAAGGAGCAGCACTGCAGCAAAGAAGGTGACGTGTTTTGC 6117295 Query 326 ACCATTGGGGAGCCAGTTC---AAGGCAACCGGAGTGACCTTGCCGGAGCTGTTGCCGCC 382 | |||| || || | |||| ||| ||| ||||| ||||||| ||| ||| Sbjct 6117294 TGGGTGGGGGTCCCTGTGCGCCAAGGGCACCAGAGCGACCTCATGGGAGCTGCTGCTGCC 6117235 Query 383 GTGAAGGCCGGAAGGAGAATGGTGGATATCGCGCGAGAGTTCAGCGAGATCTACGTCAAG 442 |||||||| ||| | ||||| || || |||||||||||| || |||||||||| Sbjct 6117234 ATGAAGGCCAGAACTAAAATGGCCGAAATGGCGCGAGAGTTCCCTGAAGCCTACGTCAAG 6117175 Query 443 TATGGGCGTGGTCTGAGGGATTTGGCCCTGATGATTGGACAGAAACCCCGTGACTTCAAG 502 | |||||||| || || ||| || || ||||||| ||| ||| || | || | Sbjct 6117174 TGGGGGCGTGGCCTTAGAGATCTGAGACTCCTGATTGGCCAGCAACTGCGCAATTTTGAA 6117115 Query 503 ACGGAAGTCGTCGTTATCACGGGGCCTTCCGGGGTGGGCA--AGTCG-AGACTTGCCT-C 558 || |||||| ||| | | || || | || | |||| || || | |||| | Sbjct 6117114 ACTGAAGTCTACGTGCTGATTGGCCCACCAGGTGGAGGCAAGAGCCGCTGGGCCGCCTCC 6117055 Query 559 TGAAATGGAAGGATCGAAGTTCTACAAGATGAAAGGTGACTGGTGGGATGGGTATTCCAA 618 ||| || || | ||||| || || || || |||| || || || Sbjct 6117054 TGA----GAGGGGTGACGGTTCTGTGAGGGCCGCGGGGAGGGGCGGGACGGCCATGACAG 6116999 Query 619 TGAGGATATAGTCATCATGGATGACTTCTATGGGTGGCTGCCCTTCTGTGAAATGTTGAG 678 || | | ||| ||||||||||||||||| | ||||| | |||||||| || | | Sbjct 6116998 GGAAAACACAGTAGTCATGGATGACTTCTATAGCTGGCTCCTGTTCTGTGAGCTGCTCTG 6116939 Query 679 ATTAATGGACAGGTATCCACATAAAGTTCCCGTGAAGGG------GTCTTATGTGGAGTT 732 | | ||| | ||||||||||| || ||| |||| | | | ||||| || Sbjct 6116938 GCTGACCGACCGCTATCCACATAAGGTCCCCATGAATAGAATTCCCACCTTGGTGGAATT 6116879 Query 733 CACGTCTAAGAAGATTGTCATAACGAGCAACA 764 ||| |||||||| ||||| || ||||||| Sbjct 6116878 CACAAGCAAGAAGATCGTCATGACCAGCAACA 6116847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6117749467200