Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_008033.1 Length=2063 Score E Sequences producing significant alignments: (Bits) Value seq20 167 3e-38 seq44695 77.0 4e-11 >seq20 Length=12106520 Score = 167 bits (184), Expect = 3e-38 Identities = 403/607 (66%), Gaps = 15/607 (2%) Strand=Plus/Minus Query 190 CAAGGCTTTATCCACTTAAAGAAAAAAGTGAGACTCACAAGCCTTAAAAAAGTGCTGCAA 249 ||||||| | | ||| | ||||| |||| | |||| || |||||| ||| ||| Sbjct 6117428 CAAGGCTATGTGCACCTGAAGAAGAAAGAGTGACTGTCAGCACTTAAA---GTGTTGCTG 6117372 Query 250 AGAGCTCACTGGGAGAAGGCCCGAGGCAGTGATGAAGATAATGAGAAATACTGCAGTAAA 309 | ||||||| | || | || | || |||||||||||| ||| | ||||||| ||| Sbjct 6117371 ACAGCTCACCTGAAGTTG-CCTGTGGGTCTGATGAAGATAAGGAGCAGCACTGCAGCAAA 6117313 Query 310 GAGGGGGACGTGATACTCACGATCGGCATACCAGTG----AAGGGAAACCGGAGCGACCT 365 || || |||||| | | | | || | || ||| ||||| | || ||||||||| Sbjct 6117312 GAAGGTGACGTGTTTTGCTGGGTGGGGGTCCCTGTGCGCCAAGGGCA-CCAGAGCGACCT 6117254 Query 366 TGCCGGAGCTGTTGCCGCTGTGAAAGCCGGAAGAGGAATGAGTGAGATCGCGCGAGAGTT 425 ||||||| ||| || |||| ||| ||| |||| || || ||||||||||| Sbjct 6117253 CATGGGAGCTGCTGCTGCCATGAAGGCCAGAACTAAAATGGCCGAAATGGCGCGAGAGTT 6117194 Query 426 CAGTGAGACTTACGTCAGATATGGGCGGGGCCTCCGGGATCTAGCCCTTCTGATTGGTCA 485 | ||| | ||||||| | ||||| ||||| | ||||| || |||||||| || Sbjct 6117193 CCCTGAAGCCTACGTCAAGTGGGGGCGTGGCCTTAGAGATCTGAGACTCCTGATTGGCCA 6117134 Query 486 GAAGCAACGTGACTTCAAGACGGAAGTTACCGTGCTTACTGGCCCTTCAGGTGTGGGCAA 545 | | | || | || | || ||||| |||||| | |||||| |||||| ||||| Sbjct 6117133 GCAACTGCGCAATTTTGAAACTGAAGTCTACGTGCTGATTGGCCCACCAGGTGGAGGCAA 6117074 Query 546 GTCCCGGTGGGCCAATGAACAAGTTGGGACAAAGTTCTATAAAATGAAAGGTGATTGGTG 605 | ||| |||||| || ||| | ||||| | | || || || | Sbjct 6117073 GAGCCGCTGGGCCGCCTCCTGAGAGGGGTGACGGTTCTGTGAGGGCCGCGGGGAGGGGCG 6117014 Query 606 GGATGGATACTGCAATGAGGATATAGTAATCATTGATGATTTCTATGGGTGGATACCCTT 665 ||| || | || || | | |||| |||| ||||| |||||| | ||| | | || Sbjct 6117013 GGACGGCCATGACAGGGAAAACACAGTAGTCATGGATGACTTCTATAGCTGGCTCCTGTT 6116954 Query 666 CTGTGAGCTGCTGAGACTGTGTGATCGATACCCACATAAGGTGCCCGTCAAGGG------ 719 |||||||||||| | ||| || || || ||||||||||| ||| | || | Sbjct 6116953 CTGTGAGCTGCTCTGGCTGACCGACCGCTATCCACATAAGGTCCCCATGAATAGAATTCC 6116894 Query 720 GTCCTATGTGGAGTTCAACAGCAAGCAGATCATCATTACCAGTAACACCCCACCGGACTC 779 ||| ||||| |||| |||||| ||||| |||| ||||| |||| |||||| Sbjct 6116893 CACCTTGGTGGAATTCACAAGCAAGAAGATCGTCATGACCAGCAACAAGATGCCGGACCA 6116834 Query 780 GTGGTAT 786 ||||||| Sbjct 6116833 GTGGTAT 6116827 >seq44695 Length=704 Score = 77.0 bits (84), Expect = 4e-11 Identities = 176/258 (68%), Gaps = 14/258 (5%) Strand=Plus/Plus Query 49 GGCTCTGCCGCTAAGAGATGGTGCTTCACCCTCAACAACCCCACAGAGGAAGAGATTG-C 107 ||| | ||||| | | ||||||||||| || | ||||| ||||| || ||| | | | Sbjct 440 GGCGCAGCCGCAGAACGCTGGTGCTTCACGCTGACTAACCCGACAGATGAGGAGGTCGAC 499 Query 108 AGCAGTCAA-AG--CCTGGCAGCACAGTGAGTACCACTATGCCATTGTGGGAAAAGAAAA 164 | | || || || ||| | | |||||||||| ||||| || ||||| | | ||| Sbjct 500 ATC-GTGAAGAGCTCCTTCCCG---AGTGAGTACCCGTATGCGATCGTGGGTACGGCAAA 555 Query 165 AGGAGAGCAAGGGACCCCCCACCTCCAAGGCTTTATCCACTTAAAGAAAAAAGTGAGACT 224 || ||||| |||||||| || || | || ||| | || || || || | | || Sbjct 556 AGTGGAGCACGGGACCCCTCATCTGAAGGGTTTTGTGCAGACGAAAAAGAAGCAGCGGCT 615 Query 225 CACAAGCCTTAAAAAAG---TGCTGCAAAGAGCTCACTGGGAGAAGGCCCGAGGCAGTGA 281 |||| || |||| ||||| ||||| || ||||| || | ||| |||||||| Sbjct 616 ---GAGCCATATGAAAGGGTTGCTGAGTAGAGCGCATTGGGAAAAAGTCCGTGGCAGTGA 672 Query 282 TGAAGATAATGAGAAATA 299 ||||||| ||| || || Sbjct 673 CGAAGATATTGAAAATTA 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6471800661600