Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_008521.1 Length=2035 Score E Sequences producing significant alignments: (Bits) Value seq20 114 2e-22 >seq20 Length=12106520 Score = 114 bits (126), Expect = 2e-22 Identities = 271/406 (67%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 483 GGGAGCTGTTGCCGCTGTGAAACGCGGAAGTCAAATGAGTGAAATCGCGCGAGAGTTCAG 542 |||||||| ||| || |||| | ||| | ||||| ||||| |||||||||||| Sbjct 6117250 GGGAGCTGCTGCTGCCATGAAGGCCAGAACTAAAATGGCCGAAATGGCGCGAGAGTTCCC 6117191 Query 543 TGAAGTCTACGTCAAGTATGGGCGGGGCCTCCGTGATCTCCGGTTGCTGATTGGTTGCCC 602 ||||| ||||||||||| ||||| ||||| | ||||| | | |||||||| | Sbjct 6117190 TGAAGCCTACGTCAAGTGGGGGCGTGGCCTTAGAGATCTGAGACTCCTGATTGGCCAGCA 6117131 Query 603 GCCCCGCGATTTCAAAACAGAAGTCATCGTTCTGATTGGCCCACCTGGCTGTGGCAAGTC 662 | ||| |||| |||| |||||| ||| |||||||||||||| || | |||||| Sbjct 6117130 ACTGCGCAATTTTGAAACTGAAGTCTACGTGCTGATTGGCCCACCAGGTGGAGGCAAGAG 6117071 Query 663 AAAATTGGCC----AATGAGATGGAAGGGTCTAAGTTCTACAAGATGAAAGGTGATTGGT 718 | |||| ||| || |||| ||||| || || || || Sbjct 6117070 CCGCTGGGCCGCCTCCTGA----GAGGGGTGACGGTTCTGTGAGGGCCGCGGGGAGGGGC 6117015 Query 719 GGGATGGTTATGACAATCAAGATATTGTCATAATCGATGACTTCTACGGTTGGCTGCCGT 778 |||| || |||||| || | | || | || ||||||||||| | ||||| | || Sbjct 6117014 GGGACGGCCATGACAGGGAAAACACAGTAGTCATGGATGACTTCTATAGCTGGCTCCTGT 6116955 Query 779 ACTGTGAGTGCCTACGTCTGTGTGACCGGTACCCTCACCGTGTGCCTGTGAA-AG-GTGC 836 ||||||| || | ||| ||||| || || || || || |||| || | | Sbjct 6116954 TCTGTGAGCTGCTCTGGCTGACCGACCGCTATCCACATAAGGTCCCCATGAATAGAATTC 6116895 Query 837 CTAC----GTGGAATTCACCAGCAAGAAGATTGTGTTTACCAGCAA 878 | || ||||||||||| ||||||||||| || | |||||||| Sbjct 6116894 CCACCTTGGTGGAATTCACAAGCAAGAAGATCGTCATGACCAGCAA 6116849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6382490450400