Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_008522.1 Length=1962 Score E Sequences producing significant alignments: (Bits) Value seq20 134 2e-28 seq44695 98.7 1e-17 seq5 89.7 6e-15 >seq20 Length=12106520 Score = 134 bits (148), Expect = 2e-28 Identities = 336/509 (66%), Gaps = 11/509 (2%) Strand=Plus/Minus Query 266 GCCCGTGGTTCCGATGAGGACAATGAGCAGTATTGCGGCAAGGAGGGGGACGTTATACTC 325 ||| |||| || ||||| || || |||||| | ||| |||| || || ||||| | | Sbjct 6117354 GCCTGTGGGTCTGATGAAGATAAGGAGCAGCACTGCAGCAAAGAAGGTGACGTGTTTTGC 6117295 Query 326 ACCATTGGGGTTCCTT----CAAAGGGTAACCGGAGTGACCTTGCCGGAGCTGTTGCCGC 381 | ||||| ||| | ||||| | || ||| ||||| ||||||| ||| || Sbjct 6117294 TGGGTGGGGGTCCCTGTGCGCCAAGGGCA-CCAGAGCGACCTCATGGGAGCTGCTGCTGC 6117236 Query 382 CGTGAAAGCCGGAAGAGGTATGGCCGAAGTCGCGCGAGAGTTCAGTCTAGCCTACGTCAG 441 | |||| ||| ||| ||||||||| | |||||||||||| | ||||||||||| Sbjct 6117235 CATGAAGGCCAGAACTAAAATGGCCGAAATGGCGCGAGAGTTCCCTGAAGCCTACGTCAA 6117176 Query 442 ATATGGGCGGGGCCTGCGTGATCTTGCGCTGCTGATTGGCCAGAAGCCCCGTGACTTCAA 501 | ||||| ||||| | ||||| || |||||||||||| | | || | || | Sbjct 6117175 GTGGGGGCGTGGCCTTAGAGATCTGAGACTCCTGATTGGCCAGCAACTGCGCAATTTTGA 6117116 Query 502 AACGGAAGTCATAGTGCTGACCGGCCCTAGTGGGTGTGGCAAATCCCGCTGGGCCAATGA 561 ||| |||||| ||||||| ||||| || | ||||| |||||||||| Sbjct 6117115 AACTGAAGTCTACGTGCTGATTGGCCCACCAGGTGGAGGCAAGAGCCGCTGGGCCGCCTC 6117056 Query 562 ACAAGAAGGAACTAAGTTTTATAAAATGAAAGGTGATTGGTGGGACGGGTATTCAAACGA 621 ||| || ||| | | | || || || ||||||| || | || Sbjct 6117055 CTGAGAGGGGTGACGGTTCTGTGAGGGCCGCGGGGAGGGGCGGGACGGCCATGACAGGGA 6116996 Query 622 AGACATGGTCATCATAGATGACTTTTATGGGTGGATCCCGTTCTGTGAACTGCTCCGCCT 681 | ||| || |||| |||||||| ||| | ||| ||| ||||||||| |||||| | || Sbjct 6116995 AAACACAGTAGTCATGGATGACTTCTATAGCTGGCTCCTGTTCTGTGAGCTGCTCTGGCT 6116936 Query 682 CTGTGACCGTTACCCACACAAGGTGCCCGTTAAGGG------CAGCTATGTGGAGTTCAC 735 ||||| || ||||| ||||| ||| | || | || || ||||| ||||| Sbjct 6116935 GACCGACCGCTATCCACATAAGGTCCCCATGAATAGAATTCCCACCTTGGTGGAATTCAC 6116876 Query 736 GTCTAAGAAAATAATAATTACAAGCAACA 764 ||||| || | || || ||||||| Sbjct 6116875 AAGCAAGAAGATCGTCATGACCAGCAACA 6116847 >seq44695 Length=704 Score = 98.7 bits (108), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 62 CGGTGGTGCTTTACCCTCAACAACCCGACTGAGGAGGAGATAGAGAGAGTGAAAAA-TCT 120 || |||||||| || || | |||||||| || |||||| | || | ||||| | || Sbjct 455 CGCTGGTGCTTCACGCTGACTAACCCGACAGATGAGGAGGTCGACATCGTGAAGAGCTCC 514 Query 121 GTCTCCGAGTGAGTATCACTATGCGATAGTCGGGAAAGAAAAGGGAGAACAAGGCACCCC 180 || ||||||||||| | |||||||| || || | | ||| | || || || ||||| Sbjct 515 TTC-CCGAGTGAGTACCCGTATGCGATCGTGGGTACGGCAAAAGTGGAGCACGGGACCCC 573 Query 181 GCATTTGCAAGGGTTCCTGCATCTGAAAAAGAAGCAGCGGTTGAAGCAAATGAAAGAGCT 240 ||| || | || || |||| |||||||||||||||| ||| || ||||||| | | Sbjct 574 TCATCTGAAGGGTTTTGTGCAGACGAAAAAGAAGCAGCGGCTGAGCCATATGAAAGGGTT 633 Query 241 GATTCCCCGCGCGCATTTCGAGAGAGCCCGTGG 273 | | | ||||||| || | || |||||| Sbjct 634 GCTGAGTAGAGCGCATTGGGAAAAAGTCCGTGG 666 >seq5 Length=74395783 Score = 89.7 bits (98), Expect = 6e-15 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 67 GTGCTTTACCCTCAACAACCCGACTGAGGAGGAGATAGAGAGAGTGAAAAA-TCTGTCTC 125 |||||| || || | |||||||| || |||||| | || | ||||| | || || | Sbjct 2938717 GTGCTTCACGCTGACTAACCCGACAGATGAGGAGGTCGACATCGTGAAGAGCTCCTTC-C 2938775 Query 126 CGAGTGAGTATCACTATGCGATAGTCGGGAAAGAAAAGGGAGAACAAGGCACCCCGCATT 185 |||||||||| | |||||||| || | | | ||| | || || || ||||| ||| Sbjct 2938776 CGAGTGAGTACCCGTATGCGATCGTGAGTACGGCAAAAGTGGAGCACGGGACCCCTCATC 2938835 Query 186 TGCAAGGGTTCCTGCATCTGAAAAAGAAGCAGCGGTTGAAGCAAATGAAAGAGCTGATTC 245 || | || || |||| |||||||||||||||| ||| || ||||||| | || | Sbjct 2938836 TGAAGGGTTTTGTGCAGACGAAAAAGAAGCAGCGGCTGAGCCATATGAAAGGGTTGCTGA 2938895 Query 246 CCCGCGCGCATTTCGAGAGAGCCCGTGG 273 | ||||||| || | || |||||| Sbjct 2938896 GTAGAGCGCATTGGGAAAAAGTCCGTGG 2938923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6149645971200