Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_026945.1 Length=1982 Score E Sequences producing significant alignments: (Bits) Value seq20 190 3e-45 seq44695 98.7 1e-17 seq5 95.1 2e-16 >seq20 Length=12106520 Score = 190 bits (210), Expect = 3e-45 Identities = 398/581 (69%), Gaps = 29/581 (5%) Strand=Plus/Minus Query 266 GCCCGGGGTTCCGATGAGGATAATGAGCAGTATTGCAGCAAAGAAGGGGACGTGATACTT 325 ||| | || || ||||| ||||| |||||| | |||||||||||||| |||||| | || Sbjct 6117354 GCCTGTGGGTCTGATGAAGATAAGGAGCAGCACTGCAGCAAAGAAGGTGACGTGTT--TT 6117297 Query 326 ACCA--TTGGGGCCCC----CGCAAAAGGCAATCGGAGTGACCTTGCCGGAGCTGTTGCC 379 | | |||| ||| ||| || |||| | ||| ||||| ||||||| ||| Sbjct 6117296 GCTGGGTGGGGGTCCCTGTGCGCCAAGGGCAC-CAGAGCGACCTCATGGGAGCTGCTGCT 6117238 Query 380 GCCGTGAAAGCCGGAAGACCAATGACGGAAGTCGCGCGAGAGTTCAGTGAAGCCTACGTC 439 ||| |||| ||| ||| |||| | ||| | |||||||||||| ||||||||||||| Sbjct 6117237 GCCATGAAGGCCAGAACTAAAATGGCCGAAATGGCGCGAGAGTTCCCTGAAGCCTACGTC 6117178 Query 440 AAGTGGGGGCGTGGCCTGAAGGATCTGGCACTGATGATTGGCCAGAAGCCCCGTGACTTC 499 ||||||||||||||||| | |||||| ||| ||||||||||| | | || | || Sbjct 6117177 AAGTGGGGGCGTGGCCTTAGAGATCTGAGACTCCTGATTGGCCAGCAACTGCGCAATTTT 6117118 Query 500 AAGACGGAGGTGATTGTGTTGACCGGCCCCTCGGGGGTGGGGAAGAGCCGCTGGGCC--- 556 | || || || ||| ||| ||||| | || | || ||||||||||||||| Sbjct 6117117 GAAACTGAAGTCTACGTGCTGATTGGCCCACCAGGTGGAGGCAAGAGCCGCTGGGCCGCC 6117058 Query 557 -AATGAACAGGAAGGT-ACGAAATACTACAAGATGAAGGGTGATTGGTGGGACGGATATT 614 || | ||| ||| ||| | || || || || || ||||||| || Sbjct 6117057 TCCTG-AGAGG--GGTGACG--GTTCTGTGAGGGCCGCGGGGAGGGGCGGGACGGCCATG 6117003 Query 615 CAAACGAAGACATCGTGGTGATTGACGACTTCTATGGGTGGATCCCGTTCTGTGAGCTGC 674 | ||| ||| || || || || ||||||||| | ||| ||| |||||||||||||| Sbjct 6117002 ACAGGGAAAACACAGTAGTCATGGATGACTTCTATAGCTGGCTCCTGTTCTGTGAGCTGC 6116943 Query 675 TCCGCCTTTGTGATCGTTATCCCCACAAAGTGCCAGTCAA-AG-----GCAGCTACGTGG 728 || | || || || ||||| || || || || | || || || || |||| Sbjct 6116942 TCTGGCTGACCGACCGCTATCCACATAAGGTCCCCATGAATAGAATTCCCACCTTGGTGG 6116883 Query 729 AGTTTACGTCAAAGAAGATCATCATCACGAGCAACACCCACCCGAACCATTGGTATAACG 788 | || || ||||||||| |||| || ||||||| ||| |||| |||||| | Sbjct 6116882 AATTCACAAGCAAGAAGATCGTCATGACCAGCAACAAGATGCCGGACCAGTGGTAT---G 6116826 Query 789 AAGAGAAGTGCTATATGCAAGCACTGTTCAGACGTATCAAC 829 |||| ||| | | ||| ||| ||| |||| | |||||| Sbjct 6116825 GAGAGCAGT-CAACATGAGGGCATTGTACAGAAGGATCAAC 6116786 >seq44695 Length=704 Score = 98.7 bits (108), Expect = 1e-17 Identities = 174/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 62 CGGTGGGTCTTTACGCTGAACAACCCGACTGAGCAAGAAGTTGAAAGCGTGAAAAGTCTG 121 || ||| ||| ||||||| |||||||| || | || || || | |||||| || || Sbjct 455 CGCTGGTGCTTCACGCTGACTAACCCGACAGATGAGGAGGTCGACATCGTGAAGAG-CTC 513 Query 122 CCTCC-GAGTGAGTACCACTATGCGATAGTCGGGAAAGAGAAAGGAGAGCAAGGGACACC 180 | ||| ||||||||||| |||||||| || || | | |||| ||||| ||||| || Sbjct 514 CTTCCCGAGTGAGTACCCGTATGCGATCGTGGGTACGGCAAAAGTGGAGCACGGGACCCC 573 Query 181 GCATTTGCAGGGCTTCCTGCATTTGAAAAAGAAGGTTCGACTGAACCAAATGAAGCAGTT 240 ||| || |||| || |||| |||||||||| || |||| ||| ||||| ||| Sbjct 574 TCATCTGAAGGGTTTTGTGCAGACGAAAAAGAAGCAGCGGCTGAGCCATATGAAAGGGTT 633 Query 241 GATACCGCGCGCGCATTTCGAGATCGCCCGGGGTTCCGATGAGGATAATGAGCAGTATTG 300 | | | ||||||| || | | ||| || || || |||| ||| | ||| Sbjct 634 GCTGAGTAGAGCGCATTGGGAAAAAGTCCGTGGCAGTGACGAAGATATTGAAAATTATGC 693 Query 301 CAGCAAAGAAG 311 || |||||||| Sbjct 694 CACCAAAGAAG 704 >seq5 Length=74395783 Score = 95.1 bits (104), Expect = 2e-16 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 70 CTTTACGCTGAACAACCCGACTGAGCAAGAAGTTGAAAGCGTGAAAAGTCTGCCTCC-GA 128 ||| ||||||| |||||||| || | || || || | |||||| || || | ||| || Sbjct 2938720 CTTCACGCTGACTAACCCGACAGATGAGGAGGTCGACATCGTGAAGAG-CTCCTTCCCGA 2938778 Query 129 GTGAGTACCACTATGCGATAGTCGGGAAAGAGAAAGGAGAGCAAGGGACACCGCATTTGC 188 ||||||||| |||||||| || | | | |||| ||||| ||||| || ||| || Sbjct 2938779 GTGAGTACCCGTATGCGATCGTGAGTACGGCAAAAGTGGAGCACGGGACCCCTCATCTGA 2938838 Query 189 AGGGCTTCCTGCATTTGAAAAAGAAGGTTCGACTGAACCAAATGAAGCAGTTGATACCGC 248 |||| || |||| |||||||||| || |||| ||| ||||| |||| | Sbjct 2938839 AGGGTTTTGTGCAGACGAAAAAGAAGCAGCGGCTGAGCCATATGAAAGGGTTGCTGAGTA 2938898 Query 249 GCGCGCATTTCGAGATCGCCCGGGGTTCCGATGAGGATAATGAGCAGTATTGCAGCAAAG 308 | ||||||| || | | ||| || || || |||| ||| | ||| || ||||| Sbjct 2938899 GAGCGCATTGGGAAAAAGTCCGTGGCAGTGACGAAGATATTGAAAATTATGCCACCAAAG 2938958 Query 309 AAGG 312 |||| Sbjct 2938959 AAGG 2938962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6213438979200