Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_030199.1 Length=1939 Score E Sequences producing significant alignments: (Bits) Value seq20 152 6e-34 seq44695 91.5 2e-15 seq5 87.8 2e-14 >seq20 Length=12106520 Score = 152 bits (168), Expect = 6e-34 Identities = 261/375 (70%), Gaps = 3/375 (1%) Strand=Plus/Minus Query 354 GCAAAGGGCAACCGGAGCGACCTGTCGGGAGCTGTTGCCGCCGTGAAAGCCGGAAGAGCA 413 || ||||||| || ||||||||| |||||||| ||| ||| |||| ||| ||| | Sbjct 6117275 GCCAAGGGCA-CCAGAGCGACCTCATGGGAGCTGCTGCTGCCATGAAGGCCAGAACTAAA 6117217 Query 414 ATGAGCGAGATCGCGCGAGAGTTCAGTGAAGTTTACGTCAAGTATGGGCGTGGCCTAAGA 473 ||| ||| || |||||||||||| ||||| |||||||||| ||||||||||| ||| Sbjct 6117216 ATGGCCGAAATGGCGCGAGAGTTCCCTGAAGCCTACGTCAAGTGGGGGCGTGGCCTTAGA 6117157 Query 474 GATCTGGCTCTCCTGATTGGTCAGAAACCACGTGACTTCAAGACTGACGTCATAC-TGAT 532 |||||| ||||||||||| ||| ||| || | || | ||||| ||| ||| || | Sbjct 6117156 GATCTGAGACTCCTGATTGGCCAGCAACTGCGCAATTTTGAAACTGAAGTC-TACGTGCT 6117098 Query 533 AACTGGCCCCTCGGGGGTGGGGAAAAGCCGTTGGGCATTTGAATATCCCGGAAGCAAGTT 592 | |||||| | || | || || ||||| ||||| | || | ||| Sbjct 6117097 GATTGGCCCACCAGGTGGAGGCAAGAGCCGCTGGGCCGCCTCCTGAGAGGGGTGACGGTT 6117038 Query 593 CTATAAAATGAAGGGGGAGTGGTGGGACGGATATGCAAATGAGGATGTTGTCGTCATTGA 652 || | | |||||| || ||||||| ||| | || | || ||||| || Sbjct 6117037 CTGTGAGGGCCGCGGGGAGGGGCGGGACGGCCATGACAGGGAAAACACAGTAGTCATGGA 6116978 Query 653 TGACTTTTATGGCTGGCTGCCATTTTGTGAGCTGTTGAGACTGACTGATCGTTACCCACA 712 |||||| ||| ||||||| | || ||||||||| | | ||||| || || || ||||| Sbjct 6116977 TGACTTCTATAGCTGGCTCCTGTTCTGTGAGCTGCTCTGGCTGACCGACCGCTATCCACA 6116918 Query 713 CAAAGTGCCCGTGAA 727 || || ||| |||| Sbjct 6116917 TAAGGTCCCCATGAA 6116903 >seq44695 Length=704 Score = 91.5 bits (100), Expect = 2e-15 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 75 CGTTGGTGCTTTACCCTTAACAACCCGACAGATGAGGAGGTCCAGAAGATAAAAGACATG 134 || |||||||| || || | ||||||||||||||||||||| | | | || || | Sbjct 455 CGCTGGTGCTTCACGCTGACTAACCCGACAGATGAGGAGGTCGACATCGTGAA-GAGCTC 513 Query 135 AATCC-GAGTGAGTACCACTATGCTATAGTTGGGAAAGAACGAGGAGAGCAAGGGACCCC 193 ||| ||||||||||| ||||| || || || | | | || ||||| |||||||| Sbjct 514 CTTCCCGAGTGAGTACCCGTATGCGATCGTGGGTACGGCAAAAGTGGAGCACGGGACCCC 573 Query 194 TCATCTGCAAGGGTTTT-TGCA-CCTAAAGTGCAAAAAGAGACTTAACCAGCTGAAGGAG 251 ||||||| ||||||||| |||| | ||| | || || | || | ||| |||| | | Sbjct 574 TCATCTG-AAGGGTTTTGTGCAGACGAAAAAG-AAGCAGCGGCTGAGCCATATGAAAGGG 631 Query 252 TT-CTTAGCGCGTGCGCATTGGGAGAAGGCCCGTGGTTCAGATGAAGACAATGA 304 || || || | ||||||||||| || | |||||| || ||||| | ||| Sbjct 632 TTGCTGAG-TAGAGCGCATTGGGAAAAAGTCCGTGGCAGTGACGAAGATATTGA 684 >seq5 Length=74395783 Score = 87.8 bits (96), Expect = 2e-14 Identities = 192/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 80 GTGCTTTACCCTTAACAACCCGACAGATGAGGAGGTCCAGAAGATAAAAGACATGAATCC 139 |||||| || || | ||||||||||||||||||||| | | | || || | ||| Sbjct 2938717 GTGCTTCACGCTGACTAACCCGACAGATGAGGAGGTCGACATCGTGAA-GAGCTCCTTCC 2938775 Query 140 -GAGTGAGTACCACTATGCTATAGTTGGGAAAGAACGAGGAGAGCAAGGGACCCCTCATC 198 ||||||||||| ||||| || || | | | | || ||||| ||||||||||||| Sbjct 2938776 CGAGTGAGTACCCGTATGCGATCGTGAGTACGGCAAAAGTGGAGCACGGGACCCCTCATC 2938835 Query 199 TGCAAGGGTTTT-TGCA-CCTAAAGTGCAAAAAGAGACTTAACCAGCTGAAGGAGTT-CT 255 || ||||||||| |||| | ||| | || || | || | ||| |||| | ||| || Sbjct 2938836 TG-AAGGGTTTTGTGCAGACGAAAAAG-AAGCAGCGGCTGAGCCATATGAAAGGGTTGCT 2938893 Query 256 TAGCGCGTGCGCATTGGGAGAAGGCCCGTGGTTCAGATGAAGACAATGAGGCCTATTGCT 315 || | ||||||||||| || | |||||| || ||||| | ||| ||| | Sbjct 2938894 GAG-TAGAGCGCATTGGGAAAAAGTCCGTGGCAGTGACGAAGATATTGAAAATTATGCCA 2938952 Query 316 CTAAGGAAGGGGAAGTTATACTTACCCTTGGCATGCC 352 | || ||||| || || |||| | || || ||||| Sbjct 2938953 CCAAAGAAGGCAAAATTGTACTCGCTCTGGGTATGCC 2938989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6076284012000