Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_032097.1 Length=4284 Score E Sequences producing significant alignments: (Bits) Value seq1814 113 1e-21 >seq1814 Length=2488 Score = 113 bits (124), Expect = 1e-21 Identities = 213/306 (70%), Gaps = 12/306 (4%) Strand=Plus/Plus Query 1760 TATTTGAAGGCATGGAAACTTCCATTCCTGTCAAATACAGGAAACCAGTAAAATTACCAC 1819 |||||||||| ||| | | ||||||||| ||||||| || ||| | |||||| Sbjct 2 TATTTGAAGGTATGACATGTAGCATTCCTGTGAAATACAAAAAGCCATATATGTTACCAA 61 Query 1820 GCACACCCATCATAATAACTACAAATCATGCTCCCTGGAGATTTTGCACTAAAGAAGAAG 1879 | | ||| ||| | || || |||||||||||||| ||| | ||||| || | |||||| Sbjct 62 GGATACCAATCCTGATGACAACAAATCATGCTCCTTGGCGTTTTTGTACACAGGAAGAAC 121 Query 1880 AAATGTTTAAAAATAGAATGTTTATTTTTAACTGGAACCATAACATGCA--TAACACCAC 1937 ||||||| ||| | ||||| || ||| | ||| || | ||| | | | | | Sbjct 122 CCATGTTTAGAAACCGTATGTTCATCTTTGAATGGTTATATCA-ATGTAAGGATGAAC-C 179 Query 1938 TTTCACTTACAGAGTTAGTGAATATAGCTGCGAATGCCGAATTTGTAAAACAAGTCGAAG 1997 ||| |||| |||| |||||| || ||||| ||||||| ||| || | ||| | | Sbjct 180 TTTAACTTTCAGAACGAGTGAACATGGCTGCCAATGCCGTTATTGCAAGAGAAGCAGCTG 239 Query 1998 CAGCGAGACTACTACTAGTGGGGGAACA---ACTAGC-AGCTTGCCGGGAGGAGAACAAC 2053 ||||||| ||||| || | |||| ||||| ||| || || || |||||||| Sbjct 240 CAGCGAGGCTACTTTTA---GCACAACAGAGCCTAGCGAGC-TGTCGAGAACAGAACAAC 295 Query 2054 CCATAC 2059 |||||| Sbjct 296 CCATAC 301 Score = 86.0 bits (94), Expect = 2e-13 Identities = 175/253 (69%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 2775 TCAACACCGGATGGCATATAATACCAACTATACTATGGAAACACTTCACTACTCCCAAAC 2834 |||| || ||||||||||| | ||||| || ||||||||||| | || ||||||| Sbjct 974 TCAATACGGGATGGCATATTCTTCCAACAATGTTATGGAAACACCTTGTAACACCCAAAC 1033 Query 2835 AATGGTGTAATTTCATGATTAAATATGAAGCTTATACAGT-AAAAGGA-TAC-ACTGTCA 2891 ||||| | | | |||||| |||||| ||| || |||| | ||| ||| | Sbjct 1034 AATGGGCAGAACTTACTATTAAAGCTGAAGCATATCATGTGGAAAGTATTACGACT---A 1090 Query 2892 CTGTATATAATCCTATACCTATGACACAACAACTCGCTATTCAAGGCACCACAGCATTTA 2951 |||| | || |||| ||||| |||||| || |||||| || | ||| | Sbjct 1091 CTGTGTTCAACATGGTACCAATGACTACACAACTGGCAATTCAATCAACAAATATATTCA 1150 Query 2952 CAGCATTTAATAACACCATATATACATTAGGAGCACA-AGACGATATATACGAAACTAGT 3010 | ||||| |||||||| || ||| | ||||| ||| || ||| |||||||||| ||| Sbjct 1151 CTGCATTCAATAACACTATCTATGCTATAGGA-TACAGTGATGATCTATACGAAACCAGT 1209 Query 3011 TATCATAACTGGT 3023 | || || |||| Sbjct 1210 TGGCAAAATTGGT 1222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13551531154000