Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_001944.1 Length=1993 Score E Sequences producing significant alignments: (Bits) Value seq1769 89.7 6e-15 >seq1769 Length=4249382 Score = 89.7 bits (98), Expect = 6e-15 Identities = 281/429 (66%), Gaps = 26/429 (6%) Strand=Plus/Minus Query 474 GGAGCTGTTGCTGCCGTGATGTCCGGACCCAAAATGAAGGAAGTCGCGCGAGAGTTCCCA 533 ||||||| ||| ||||||| | ||||| | |||||| ||| ||||| ||||||||||| Sbjct 1786056 GGAGCTGCTGCCGCCGTGAAGGCCGGAACTAAAATGGCCGAAATCGCGTGAGAGTTCCCA 1785997 Query 534 GATATCTACGTCAGGCATGGGCGGGGCTTGCATAGC-CTCTCGCTATTGGTTGGTTCCCG 592 | ||||| || | ||| | ||| | || || || || || |||| || | Sbjct 1785996 AAGC-CTACGCCAAGTGGGGGTGTGGCCT-CAGAGATCTGAGACTCCTGATTGG--CCAG 1785941 Query 593 CCCGCGTG--ATTTTAAGACTGAGGTTGACGTCATTTACGGGCCACCGGGGTGTGGCAAG 650 | | || |||| || ||||| || ||| | || ||||| ||||| |||||| Sbjct 1785940 CAACCATGCAATTTAAAAACTGAAGTCTGCGTGCTGATTGGCCCACCAGGGTGAGGCAAG 1785881 Query 651 AGTCGATGGGCCAATGAGCAGCCTGGGACCAAATATTATAAAATGCGCGGTGAATGGTGG 710 || || |||||| || ||| | | | | || ||||| |||||| || Sbjct 1785880 AGCCGTTGGGCCGCCTCCCATGAGGGGTCACAGTCCCACAAGGCCCGCGGGGAATGGCGG 1785821 Query 711 GAT-----------GGATATGATGGGGAAGATGTCGT-CA-TCTTGGACGACTTTTATGG 757 || || | ||| |||||| | | || || |||| ||||| ||| | Sbjct 1785820 GACAATGGCAGGACGGCTGTGACGGGGAAAACAAAGAGCACTCATGGATGACTTCTATAG 1785761 Query 758 GTGGCTACCTTATTGCGAGATGCTCCGCCTCTGCGACCGTTACCCACATAAAGTGCCAGT 817 ||||| | | || ||| ||||||| || |||||| || ||||||||||| || || Sbjct 1785760 CTGGCTCCTGTTCTGTGAGCTGCTCCGGCTGACCGACCGCTATCCACATAAAGTCCCTGT 1785701 Query 818 TAAGGG------CGCTTTTGTGGAGTTTACGAGCAAGAGGATCATTATCACGAGCAATAA 871 || || ||| |||||||| || || || |||| |||||| || || ||||| || Sbjct 1785700 GAATGGAATTCCCGCCTTTGTGGAATTCACAAGTAAGAAGATCATCATGACCAGCAACAA 1785641 Query 872 GGCCCCGGA 880 | ||||| Sbjct 1785640 GATGCCGGA 1785632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6268460642430