Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_002361.1 Length=2037 Score E Sequences producing significant alignments: (Bits) Value seq1769 134 2e-28 >seq1769 Length=4249382 Score = 134 bits (148), Expect = 2e-28 Identities = 342/514 (67%), Gaps = 35/514 (7%) Strand=Plus/Minus Query 369 ATGAGGACAATGAGAAGTACTGCTCTAAAGAGGGTAATGTGCTACTTACCC--TGGGCAT 426 |||| ||||| ||| |||||| | ||||| || | || | || || |||| || Sbjct 1786148 ATGAAGACAACGAGCAGTACTACAGCAAAGACAGTGACCTGTT--TTGCCGGGTGGGGAT 1786091 Query 427 TCCTGCGAAGGGAA---ACCGGAGCGATCTCAGCGAGGCTGTTGCCGCGGTGAAAGCCGG 483 |||| | | || |||||||| |||| | |||| |||||| ||||| ||||| Sbjct 1786090 CCCTGTGGACCGAGGGCACCGGAGCAGCCTCACAGGAGCTGCTGCCGCCGTGAAGGCCGG 1786031 Query 484 AAGAGCAATGACCGAGGTCGCGCGAGACTTCAGTGAGATATACGTCAAATATGGGCGTGG 543 || |||| |||| ||||| |||| ||| || |||| ||| | ||| |||| Sbjct 1786030 AACTAAAATGGCCGAAATCGCGTGAGAGTTCCCAAAGCC-TACGCCAAGTGGGGGTGTGG 1785972 Query 544 CTTGCGCGACCTGAAGCTGCTGATTGGTCAGCAGCCCCGTGACTTCAAAACGGAAGTCAT 603 | | | || |||| || |||||||| ||||| || | | || ||||| |||||| Sbjct 1785971 CCTCAGAGATCTGAGACTCCTGATTGGCCAGCAACCATGCAATTTAAAAACTGAAGTCTG 1785912 Query 604 CGTCATCACGGGCCCGCCCGGTTGCGGGAAGAGCCGTTGGGCAGCTGACTACCCCG-GAA 662 ||| | | ||||| || || || || |||||||||||||| || || || | | Sbjct 1785911 CGTGCTGATTGGCCCACCAGGGTGAGGCAAGAGCCGTTGGGCCGC---CTCCCATGAGGG 1785855 Query 663 GT--AAATTCTACAAG-----------ATGAAGGGTGAATGGTGGGACGGGT---ACGAC 706 || | | | ||||| ||| ||| ||||| |||||| | ||| Sbjct 1785854 GTCACAGTCCCACAAGGCCCGCGGGGAATGGCGGGACAATGGCAGGACGGCTGTGACGGG 1785795 Query 707 CACCAGGAAGTAGTCATCATTGATGACTTCTACGGCTGGCTGCCCTTCTGTGAGCTGCTG 766 | | ||| || |||| ||||||||||| ||||||| | |||||||||||||| Sbjct 1785794 GAAAACAAAG-AGCACTCATGGATGACTTCTATAGCTGGCTCCTGTTCTGTGAGCTGCTC 1785736 Query 767 CGTGTGACCGACCGGTACCCGCATAAGGTGCCCGTGAAAGG------GGCCTTTGTGGAG 820 || |||||||||| || || ||||| || || ||||| || ||||||||||| Sbjct 1785735 CGGCTGACCGACCGCTATCCACATAAAGTCCCTGTGAATGGAATTCCCGCCTTTGTGGAA 1785676 Query 821 TTCACGTCTCGCGTGATAATAGTGACCAGCAACA 854 ||||| | ||| || |||||||||||| Sbjct 1785675 TTCACAAGTAAGAAGATCATCATGACCAGCAACA 1785642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6409253020310