Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_003410.1 Length=1952 Score E Sequences producing significant alignments: (Bits) Value seq1769 113 6e-22 >seq1769 Length=4249382 Score = 113 bits (124), Expect = 6e-22 Identities = 378/575 (66%), Gaps = 39/575 (7%) Strand=Plus/Minus Query 219 GACTTAGTGCCCTGAAGAAACTACTTGCCCGAGCTCACTGGGAAAAGGCCCGTGGCTCAG 278 |||| | || ||||| ||| | |||| |||| ||| |||| |||||||| || Sbjct 1786206 GACTGACAGCACTGAAAAAAGTG-TTGCT-GAGCCCACATGGAAGTTGCCCGTGGGTCCC 1786149 Query 279 ATCATGATAACGAGGAGTATTGTAGTAAGGAAAACGACGTGATACTCACCATTGGGGAGC 338 || | || |||||| |||| | || || || | ||| || | | | |||||| | Sbjct 1786148 ATGAAGACAACGAGCAGTACTACAGCAAAGACAGTGACCTGTTTTGC-CGGGTGGGGATC 1786090 Query 339 CAGTT----CAAGGCAACCGGAGTGACCTTGCCGGAGCTGTTGCCGCCGTGAAGGCCGGA 394 | | | ||| ||||||| ||| | ||||||| ||||||||||||||||||| Sbjct 1786089 CCTGTGGACCGAGGGCACCGGAGCAGCCTCACAGGAGCTGCTGCCGCCGTGAAGGCCGGA 1786030 Query 395 AGGAGAATGGTGGATATCGCGCGAGAGTTCAGCGAGATCTACGTCAAGTATGGGCGTGGT 454 | | ||||| || |||||| |||||||| | | ||||| ||||| ||| |||| Sbjct 1786029 ACTAAAATGGCCGAAATCGCGTGAGAGTTC-CCAAAGCCTACGCCAAGTGGGGGTGTGGC 1785971 Query 455 CTGAGGGATTTGGCCCTGATGATTGGACAGAAACCCCGTGACTTCAAGACGGAAGTCGTC 514 || || ||| || || ||||||| ||| |||| | | || || || |||||| | Sbjct 1785970 CTCAGAGATCTGAGACTCCTGATTGGCCAGCAACCATGCAATTTAAAAACTGAAGTCTGC 1785911 Query 515 GTTATCACGGGGCCTTCCGGGGTG-GGCAAGTCGAGAC-TTG---CCTCTGAAATGGAAG 569 || | | |||| || ||||| ||||| ||| | ||| | || || || | Sbjct 1785910 GTGCTGA-TTGGCCCACCAGGGTGAGGCAA---GAGCCGTTGGGCCGCCTCCCAT-GAGG 1785856 Query 570 GATCGAAGTTCTACAAGATGAAAGGTGACTGGTGGG---ATGG--GTATTCCAATGAGG- 623 | || ||| | ||||| || || ||| ||| |||| | | | ||| | Sbjct 1785855 GGTCACAGTCCCACAAGGCCCGCGGGGAATGGCGGGACAATGGCAGGACGGCTGTGACGG 1785796 Query 624 -------ATATAGTCATCATGGATGACTTCTATGGGTGGCTGCCCTTCTGTGAAATGTTG 676 | | || ||||||||||||||||| | ||||| | |||||||| || | Sbjct 1785795 GGAAAACAAAGAGCACTCATGGATGACTTCTATAGCTGGCTCCTGTTCTGTGAGCTGCTC 1785736 Query 677 AGATTAATGGACAGGTATCCACATAAAGTTCCCGTGAAGGG-------GTCTTATGTGGA 729 | | | ||| | |||||||||||||| || ||||| || | ||| |||||| Sbjct 1785735 CGGCTGACCGACCGCTATCCACATAAAGTCCCTGTGAATGGAATTCCCGCCTT-TGTGGA 1785677 Query 730 GTTCACGTCTAAGAAGATTGTCATAACGAGCAACA 764 ||||| ||||||||| |||| || ||||||| Sbjct 1785676 ATTCACAAGTAAGAAGATCATCATGACCAGCAACA 1785642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6137267744860