Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_008033.1 Length=2063 Score E Sequences producing significant alignments: (Bits) Value seq1769 145 1e-31 >seq1769 Length=4249382 Score = 145 bits (160), Expect = 1e-31 Identities = 397/601 (66%), Gaps = 28/601 (5%) Strand=Plus/Minus Query 208 AAGAAA-AAAGTGAGACTCACAAGCCTTAAAAAAGTGCTGCAAAGAGCTCACTGGGAGAA 266 |||||| ||||| ||||| ||| || ||||||||| ||| |||| ||| ||| Sbjct 1786220 AAGAAAGAAAGTAAGACTGACAGCACTGAAAAAAGTGTTGCT--GAGCCCACATGGAAGT 1786163 Query 267 GGCCCGAGGCAGTGATGAAGATAATGAGAAATACTGCAGTAAAGAGGGGGACGTGATACT 326 ||||| || ||||||| || ||| | |||| ||| ||||| | ||| || | Sbjct 1786162 TGCCCGTGGGTCCCATGAAGACAACGAGCAGTACTACAGCAAAGACAGTGACCTGTTTTG 1786103 Query 327 CACGATCGGCATACCAGTGAAGGGAA---ACCGGAGCGACCTTGCCGGAGCTGTTGCCGC 383 | | | || || || ||| | || |||||||| ||| | ||||||| |||||| Sbjct 1786102 CCGGGTGGGGATCCCTGTGGACCGAGGGCACCGGAGCAGCCTCACAGGAGCTGCTGCCGC 1786043 Query 384 TGTGAAAGCCGGAAGAGGAATGAGTGAGATCGCGCGAGAGTTCAGTGAGACTTACGTCAG 443 ||||| ||||||| |||| || |||||| |||||||| || || ||| || Sbjct 1786042 CGTGAAGGCCGGAACTAAAATGGCCGAAATCGCGTGAGAGTTCCCAAAGCCT-ACGCCAA 1785984 Query 444 ATATGGGCGGGGCCTCCGGGATCTAGCCCTTCTGATTGGTCAGAAGCAACGTGACTTCAA 503 | ||| | |||||| | ||||| || |||||||| ||| | | | | | || || Sbjct 1785983 GTGGGGGTGTGGCCTCAGAGATCTGAGACTCCTGATTGGCCAGCAACCATGCAATTTAAA 1785924 Query 504 GACGGAAGTTACCGTGCTTACTGGCCCTTCAGGTGTG-GGCAAGTCCCGGTGGGCCAATG 562 || ||||| |||||| | |||||| |||| ||| |||||| ||| |||||| Sbjct 1785923 AACTGAAGTCTGCGTGCTGATTGGCCCACCAGG-GTGAGGCAAGAGCCGTTGGGCCGCCT 1785865 Query 563 AACAAGTTGGGACAAAGTTCTATAAAATGAAAGGTGATTGGTGGGA---TGGAT--ACTG 617 || | ||| || ||| | | || || || ||| |||| ||| || | Sbjct 1785864 CCCATGAGGGGTCACAGTCCCACAAGGCCCGCGGGGAATGGCGGGACAATGGCAGGACGG 1785805 Query 618 CAATGAGG--------ATATAGTAATCATTGATGATTTCTATGGGTGGATACCCTTCTGT 669 | ||| | | | || | |||| ||||| |||||| | ||| | | |||||| Sbjct 1785804 CTGTGACGGGGAAAACAAAGAGCACTCATGGATGACTTCTATAGCTGGCTCCTGTTCTGT 1785745 Query 670 GAGCTGCTGAGACTGTGTGATCGATACCCACATAAGGTGCCCGTCAAGGG------GTCC 723 |||||||| | ||| || || || |||||||| || || || || || || Sbjct 1785744 GAGCTGCTCCGGCTGACCGACCGCTATCCACATAAAGTCCCTGTGAATGGAATTCCCGCC 1785685 Query 724 TATGTGGAGTTCAACAGCAAGCAGATCATCATTACCAGTAACACCCCACCGGACTCGTGG 783 | |||||| |||| || ||| |||||||||| ||||| |||| |||||| |||| Sbjct 1785684 TTTGTGGAATTCACAAGTAAGAAGATCATCATGACCAGCAACAAGATGCCGGACCAGTGG 1785625 Query 784 T 784 | Sbjct 1785624 T 1785624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6492448516330