Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= NC_008375.1
Length=1898
Score E
Sequences producing significant alignments: (Bits) Value
seq1769 116 4e-23
>seq1769
Length=4249382
Score = 116 bits (128), Expect = 4e-23
Identities = 194/274 (71%), Gaps = 10/274 (4%)
Strand=Plus/Minus
Query 291 GACAACGAGGCGTACTGTACGAAAGATGGGGACGTGATACTTACCC--TGGGCATGCCGG 348
||||||||| ||||| | ||||| | ||| || | || || |||| || || |
Sbjct 1786143 GACAACGAGCAGTACTACAGCAAAGACAGTGACCTGTT--TTGCCGGGTGGGGATCCCTG 1786086
Query 349 TGGA---AGGGAACCGTAGCGATCTCTCCGGAGCTGTTGCCGCCGTGAAAGCCGGAAGTC 405
|||| |||| |||| ||| ||| | ||||||| |||||||||||| ||||||| |
Sbjct 1786085 TGGACCGAGGGCACCGGAGCAGCCTCACAGGAGCTGCTGCCGCCGTGAAGGCCGGAACTA 1786026
Query 406 GAATGGTGGATATCGCGCGAGAGTTCAGTGAAGTCTACGTCAAGTATGGGCGTGGCTTAC 465
||||| || |||||| |||||||| ||| ||||| ||||| ||| ||||| |
Sbjct 1786025 AAATGGCCGAAATCGCGTGAGAGTTC-CCAAAGCCTACGCCAAGTGGGGGTGTGGCCTCA 1785967
Query 466 GTGAACTGGCGCTTCTGATTGGACAGAAACCGCGAGATTTCAAAACCGAATTTATCGTTG 525
| || ||| || |||||||| ||| |||| | |||| ||||| ||| | |||
Sbjct 1785966 GAGATCTGAGACTCCTGATTGGCCAGCAACCATGCAATTTAAAAACTGAAGTCTGCGTGC 1785907
Query 526 TCACCGGTCCGTCGGGCGTG-GGCAAGAGCCGTT 558
| | || || | || ||| |||||||||||||
Sbjct 1785906 TGATTGGCCCACCAGG-GTGAGGCAAGAGCCGTT 1785874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5964477099280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |