Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_008375.1 Length=1898 Score E Sequences producing significant alignments: (Bits) Value seq1769 116 4e-23 >seq1769 Length=4249382 Score = 116 bits (128), Expect = 4e-23 Identities = 194/274 (71%), Gaps = 10/274 (4%) Strand=Plus/Minus Query 291 GACAACGAGGCGTACTGTACGAAAGATGGGGACGTGATACTTACCC--TGGGCATGCCGG 348 ||||||||| ||||| | ||||| | ||| || | || || |||| || || | Sbjct 1786143 GACAACGAGCAGTACTACAGCAAAGACAGTGACCTGTT--TTGCCGGGTGGGGATCCCTG 1786086 Query 349 TGGA---AGGGAACCGTAGCGATCTCTCCGGAGCTGTTGCCGCCGTGAAAGCCGGAAGTC 405 |||| |||| |||| ||| ||| | ||||||| |||||||||||| ||||||| | Sbjct 1786085 TGGACCGAGGGCACCGGAGCAGCCTCACAGGAGCTGCTGCCGCCGTGAAGGCCGGAACTA 1786026 Query 406 GAATGGTGGATATCGCGCGAGAGTTCAGTGAAGTCTACGTCAAGTATGGGCGTGGCTTAC 465 ||||| || |||||| |||||||| ||| ||||| ||||| ||| ||||| | Sbjct 1786025 AAATGGCCGAAATCGCGTGAGAGTTC-CCAAAGCCTACGCCAAGTGGGGGTGTGGCCTCA 1785967 Query 466 GTGAACTGGCGCTTCTGATTGGACAGAAACCGCGAGATTTCAAAACCGAATTTATCGTTG 525 | || ||| || |||||||| ||| |||| | |||| ||||| ||| | ||| Sbjct 1785966 GAGATCTGAGACTCCTGATTGGCCAGCAACCATGCAATTTAAAAACTGAAGTCTGCGTGC 1785907 Query 526 TCACCGGTCCGTCGGGCGTG-GGCAAGAGCCGTT 558 | | || || | || ||| ||||||||||||| Sbjct 1785906 TGATTGGCCCACCAGG-GTGAGGCAAGAGCCGTT 1785874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5964477099280