Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_008521.1 Length=2035 Score E Sequences producing significant alignments: (Bits) Value seq1769 114 2e-22 >seq1769 Length=4249382 Score = 114 bits (126), Expect = 2e-22 Identities = 277/415 (67%), Gaps = 22/415 (5%) Strand=Plus/Minus Query 484 GGAGCTGTTGCCGCTGTGAAACGCGGAAGTCAAATGAGTGAAATCGCGCGAGAGTTCAGT 543 ||||||| |||||| ||||| ||||| | ||||| ||||||||| |||||||| Sbjct 1786056 GGAGCTGCTGCCGCCGTGAAGGCCGGAACTAAAATGGCCGAAATCGCGTGAGAGTTCCCA 1785997 Query 544 GAAGTCTACGTCAAGTATGGGCGGGGCCTCCGTGATCTCCGGTTGCTGATTGGTTGCCCG 603 ||| ||||| ||||| ||| | |||||| | ||||| | | |||||||| | Sbjct 1785996 -AAGCCTACGCCAAGTGGGGGTGTGGCCTCAGAGATCTGAGACTCCTGATTGGCCAGCAA 1785938 Query 604 CCCCGCGATTTCAAAACAGAAGTCATCGTTCTGATTGGCCCACCTGGCTGTGGCAAGTCA 663 || || |||| ||||| |||||| ||| |||||||||||||| || || |||||| Sbjct 1785937 CCATGCAATTTAAAAACTGAAGTCTGCGTGCTGATTGGCCCACCAGGGTGAGGCAAGAGC 1785878 Query 664 AAATTGGCC-AATGAGATGGAAGGGTCTAAGTTCTACAAG-----------ATGAAAGGT 711 | |||| | || || ||||| ||| | ||||| ||| || Sbjct 1785877 CGTTGGGCCGCCTCCCAT-GAGGGGTCACAGTCCCACAAGGCCCGCGGGGAATGGCGGGA 1785819 Query 712 GATTGGTGGGATGGTTATGACAATCAAGATATTG-TCA-TAATCGATGACTTCTACGGTT 769 | ||| ||| || | |||| || | | | || | || ||||||||||| | | Sbjct 1785818 CAATGGCAGGACGGCTGTGACGGGGAAAACAAAGAGCACTCATGGATGACTTCTATAGCT 1785759 Query 770 GGCTGCCGTACTGTGAGTGCCTACGTCTGTGTGACCGGTACCCTCACCGTGTGCCTGTGA 829 |||| | || ||||||| || || ||| ||||| || || || || ||||||| Sbjct 1785758 GGCTCCTGTTCTGTGAGCTGCTCCGGCTGACCGACCGCTATCCACATAAAGTCCCTGTGA 1785699 Query 830 AAGG------TGCCTACGTGGAATTCACCAGCAAGAAGATTGTGTTTACCAGCAA 878 | || |||| ||||||||||| || |||||||| | | |||||||| Sbjct 1785698 ATGGAATTCCCGCCTTTGTGGAATTCACAAGTAAGAAGATCATCATGACCAGCAA 1785644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6402853366770