Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_008522.1 Length=1962 Score E Sequences producing significant alignments: (Bits) Value seq1769 136 5e-29 >seq1769 Length=4249382 Score = 136 bits (150), Expect = 5e-29 Identities = 348/525 (66%), Gaps = 31/525 (6%) Strand=Plus/Minus Query 266 GCCCGTGGTTCCGATGAGGACAATGAGCAGTATTGCGGCAAGGAGGGGGAC--GTTATAC 323 |||||||| ||| |||| ||||| |||||||| | | |||| || | ||| ||| | | Sbjct 1786161 GCCCGTGGGTCCCATGAAGACAACGAGCAGTACTACAGCAAAGACAGTGACCTGTTTTGC 1786102 Query 324 TCACCATTGGGGTTCCTT-----CAAAGGGTAACCGGAGTGACCTTGCCGGAGCTGTTGC 378 | ||||| ||| | | |||| | |||||| ||| | ||||||| ||| Sbjct 1786101 ---CGGGTGGGGATCCCTGTGGACCGAGGGCA-CCGGAGCAGCCTCACAGGAGCTGCTGC 1786046 Query 379 CGCCGTGAAAGCCGGAAGAGGTATGGCCGAAGTCGCGCGAGAGTTCAGTCTAGCCTACGT 438 ||||||||| ||||||| ||||||||| ||||| |||||||| |||||||| Sbjct 1786045 CGCCGTGAAGGCCGGAACTAAAATGGCCGAAATCGCGTGAGAGTTC-CCAAAGCCTACGC 1785987 Query 439 CAGATATGGGCGGGGCCTGCGTGATCTTGCGCTGCTGATTGGCCAGAAGCCCCGTGACTT 498 || | ||| | ||||| | ||||| || |||||||||||| | || | | || Sbjct 1785986 CAAGTGGGGGTGTGGCCTCAGAGATCTGAGACTCCTGATTGGCCAGCAACCATGCAATTT 1785927 Query 499 CAAAACGGAAGTCATAGTGCTGACCGGCCCTAGTGGGTGTGGCAAATCCCGCTGGGCCAA 558 ||||| |||||| ||||||| ||||| ||||| ||||| ||| |||||| Sbjct 1785926 AAAAACTGAAGTCTGCGTGCTGATTGGCCCACCAGGGTGAGGCAAGAGCCGTTGGGCCGC 1785867 Query 559 TGAACAAGAAGGAACTAAGTTTTATAA-----------AATGAAAGGTGATTGGTGGGAC 607 || || || | ||| | || |||| || | ||| |||| Sbjct 1785866 CTCCCATGAGGGGTCACAGTCCCACAAGGCCCGCGGGGAATGGCGGGACAATGGCAGGAC 1785807 Query 608 GGGTATTCAAACGAAGAC-ATGGTCA-TCATAGATGACTTTTATGGGTGGATCCCGTTCT 665 || | | ||| || | | || |||| |||||||| ||| | ||| ||| ||||| Sbjct 1785806 GGCTGTGACGGGGAAAACAAAGAGCACTCATGGATGACTTCTATAGCTGGCTCCTGTTCT 1785747 Query 666 GTGAACTGCTCCGCCTCTGTGACCGTTACCCACACAAGGTGCCCGTTAAGGG------CA 719 |||| |||||||| || ||||| || ||||| || || || || || || | Sbjct 1785746 GTGAGCTGCTCCGGCTGACCGACCGCTATCCACATAAAGTCCCTGTGAATGGAATTCCCG 1785687 Query 720 GCTATGTGGAGTTCACGTCTAAGAAAATAATAATTACAAGCAACA 764 || |||||| ||||| |||||| || || || || ||||||| Sbjct 1785686 CCTTTGTGGAATTCACAAGTAAGAAGATCATCATGACCAGCAACA 1785642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6169266012560