Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_026945.1 Length=1982 Score E Sequences producing significant alignments: (Bits) Value seq1769 158 2e-35 >seq1769 Length=4249382 Score = 158 bits (174), Expect = 2e-35 Identities = 361/541 (67%), Gaps = 27/541 (5%) Strand=Plus/Minus Query 266 GCCCGGGGTTCCGATGAGGATAATGAGCAGTATTGCAGCAAAGAAGGGGACGTGATACTT 325 ||||| || ||| |||| || || |||||||| | ||||||||| | ||| || | || Sbjct 1786161 GCCCGTGGGTCCCATGAAGACAACGAGCAGTACTACAGCAAAGACAGTGACCTGTT--TT 1786104 Query 326 ACCAT-TGGGGCCCCC----GCAAAAGGCAATCGGAGTGACCTTGCCGGAGCTGTTGCCG 380 || ||||| ||| | ||| | ||||| ||| | ||||||| ||||| Sbjct 1786103 GCCGGGTGGGGATCCCTGTGGACCGAGGGCACCGGAGCAGCCTCACAGGAGCTGCTGCCG 1786044 Query 381 CCGTGAAAGCCGGAAGACCAATGACGGAAGTCGCGCGAGAGTTCAGTGAAGCCTACGTCA 440 ||||||| ||||||| |||| | ||| ||||| |||||||| ||||||||| || Sbjct 1786043 CCGTGAAGGCCGGAACTAAAATGGCCGAAATCGCGTGAGAGTTCCCA-AAGCCTACGCCA 1785985 Query 441 AGTGGGGGCGTGGCCTGAAGGATCTGGCACTGATGATTGGCCAGAAGCCCCGTGACTTCA 500 |||||||| ||||||| | |||||| ||| ||||||||||| | || | | || | Sbjct 1785984 AGTGGGGGTGTGGCCTCAGAGATCTGAGACTCCTGATTGGCCAGCAACCATGCAATTTAA 1785925 Query 501 AGACGGAGGTGATTGTGTTGACCGGCCCCTCGGGGGTGGGGAAGAGCCGCTGGGCCAATG 560 | || || || ||| ||| ||||| | ||| || |||||||| |||||| Sbjct 1785924 AAACTGAAGTCTGCGTGCTGATTGGCCCACCAGGGTGAGGCAAGAGCCGTTGGGCCGCCT 1785865 Query 561 AACAGGAAGGTACGAAATACTACAAG-----------ATGAAGGGTGATTGGTGGGACGG 609 || || || | | | | ||||| ||| ||| | ||| |||||| Sbjct 1785864 CCCATGAGGGGTCACAGTCCCACAAGGCCCGCGGGGAATGGCGGGACAATGGCAGGACGG 1785805 Query 610 ATATTCAAACGAAGACATCGTG--GTGATTGACGACTTCTATGGGTGGATCCCGTTCTGT 667 | | ||| ||| | | | || || ||||||||| | ||| ||| ||||||| Sbjct 1785804 CTGTGACGGGGAAAACAAAGAGCACTCATGGATGACTTCTATAGCTGGCTCCTGTTCTGT 1785745 Query 668 GAGCTGCTCCGCCTTTGTGATCGTTATCCCCACAAAGTGCCAGTCAAAGG------CAGC 721 ||||||||||| || || || ||||| || ||||| || || || || | | Sbjct 1785744 GAGCTGCTCCGGCTGACCGACCGCTATCCACATAAAGTCCCTGTGAATGGAATTCCCGCC 1785685 Query 722 TACGTGGAGTTTACGTCAAAGAAGATCATCATCACGAGCAACACCCACCCGAACCATTGG 781 | ||||| || || |||||||||||||| || ||||||| ||| |||| ||| Sbjct 1785684 TTTGTGGAATTCACAAGTAAGAAGATCATCATGACCAGCAACAAGATGCCGGACCAGTGG 1785625 Query 782 T 782 | Sbjct 1785624 T 1785624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6233262547960