Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_030199.1 Length=1939 Score E Sequences producing significant alignments: (Bits) Value seq1769 131 2e-27 >seq1769 Length=4249382 Score = 131 bits (144), Expect = 2e-27 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 358 AGGGCAACCGGAGCGACCTGTCGGGAGCTGTTGCCGCCGTGAAAGCCGGAAGAGCAATGA 417 |||||| ||||||| ||| | ||||||| |||||||||||| ||||||| |||| Sbjct 1786078 AGGGCA-CCGGAGCAGCCTCACAGGAGCTGCTGCCGCCGTGAAGGCCGGAACTAAAATGG 1786020 Query 418 GCGAGATCGCGCGAGAGTTCAGTGAAGTTTACGTCAAGTATGGGCGTGGCCTAAGAGATC 477 ||| |||||| |||||||| ||| |||| ||||| ||| ||||||| ||||||| Sbjct 1786019 CCGAAATCGCGTGAGAGTTCCCA-AAGCCTACGCCAAGTGGGGGTGTGGCCTCAGAGATC 1785961 Query 478 TGGCTCTCCTGATTGGTCAGAAACCACGTGACTTCAAGACTGACGTCATACTGATAACTG 537 || ||||||||||| ||| ||||| | | || || ||||| ||| || | | || Sbjct 1785960 TGAGACTCCTGATTGGCCAGCAACCATGCAATTTAAAAACTGAAGTCTGCGTGCTGATTG 1785901 Query 538 GCCCCTCGGGGGTGGGGAAAAGCCGTTGGGC 568 |||| | ||| || || ||||||||||| Sbjct 1785900 GCCCACCAGGGTGAGGCAAGAGCCGTTGGGC 1785870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6095669996850