Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_001944.1 Length=1993 Score E Sequences producing significant alignments: (Bits) Value seq5138 152 6e-34 >seq5138 Length=6151 Score = 152 bits (168), Expect = 6e-34 Identities = 319/469 (68%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 475 GAGCTGTTGCTGCCGTGATGTCCGGACCCAAAATGAAGGAAGTCGCGCGAGAGTTCCCAG 534 ||||||| | | |||| ||||||| ||||| || | ||| || || |||| Sbjct 5432 GAGCTGTGGATCTGGTGAAGTCCGGAAGTGGAATGAGAGAGATAGCGGAAGCGTGTCCAG 5373 Query 535 ATATCTACGTCAGGCATGGG-CGGGGCTTGCATAGCCTCTCGCTATTGGTTGGTTCCCGC 593 | ||||| | | ||||| ||||||| || | ||||| || || |||| | Sbjct 5372 TTGAATACGTAAAGTATGGGGCGGGGCTC-CACCGGCTCTCACTCCTGATTGGCTGTAAA 5314 Query 594 CCGCGTGATTTTAAGACTGAGGTTGACGTCATTTACGGGCCA-CCGGGGTGTGGCAAGAG 652 || ||||| ||||| || || || || || ||||| || || || ||||| Sbjct 5313 CCACGTGACTTTAAAACGGAAGTGATAGTG-TTGGTGGGCCGTCCCGGAACCGGAAAGAG 5255 Query 653 TCGATGGGC---CAATGAGCAGCCTGGGACCAAATATTATAAAATGCGCGGTGAATGGTG 709 || ||||| |||| || | ||| | || |||||||||||| || || ||||| Sbjct 5254 CCGCTGGGCAGCCAATCAGAA---TGGAGCTAAGTATTATAAAATGAAGGGCGAGTGGTG 5198 Query 710 GGATGGATATGATGGGGAAGATGTCGTCATCTTGGACGACTTTTATGGGTGGCTACCTTA 769 ||||||||| ||| |||| || |||| | | || || |||||||| ||||| || || Sbjct 5197 GGATGGATACGATCGGGAGGAGATCGTGGTGATTGATGATTTTTATGGTTGGCTGCCCTA 5138 Query 770 TTGCGAGATGCTCCGCCTCTGCGACCGTTACCCACATAAAGTGCCAGTTAAGGGCGCTTT 829 || ||| | || | || ||||||||||| ||||| || ||||| ||||| |||| Sbjct 5137 CTGTGAGTTACTGAGACTGACTGACCGTTACCCGCATAAGGTACCAGTGAAGGGGGCTTA 5078 Query 830 TGTGGAGTTTACGAGCAAGAGGATCATTATCACGAGCAATAAGGCCCCGGAGACCTGGTA 889 |||||||||| ||||| || ||| |||||||| ||||| ||| ||| | ||||| Sbjct 5077 TGTGGAGTTTGTGAGCAGGAAGATTATTATCACCAGCAACAAGTACCCTCAAGAGTGGTA 5018 Query 890 CAAGGAGGACTGTGACCCGAAGCCACTGTTCCGGAGATTCACTCGTGTT 938 || | || | ||| || | |||| | ||||| ||||||||| Sbjct 5017 TAAAGCTGAGTTTGATTTGAGTGCTATGTTTAGAAGATTTACTCGTGTT 4969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6263304072516