Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_002361.1 Length=2037 Score E Sequences producing significant alignments: (Bits) Value seq5138 201 1e-48 >seq5138 Length=6151 Score = 201 bits (222), Expect = 1e-48 Identities = 413/600 (69%), Gaps = 17/600 (3%) Strand=Plus/Minus Query 233 GCCATTGTGGGGAAGGAGGTCGGGGAGCAGGGGACCCCGCATCTGCAAGGTTTTGTGCAT 292 || |||||||| || ||||| || || ||||| ||||| ||||| ||||||||| || | Sbjct 5661 GCGATTGTGGGTAAAGAGGTAGGCGAACAGGGTACCCCCCATCTTCAAGGTTTTATGAAC 5602 Query 293 CTAAAGCAGAAGAAGCGGTTGCCGCAACTT--AAGCAGCTTTTTAAGCGTGCGCATTGGG 350 || ||| |||| |||| | || || ||| ||| || | || |||||| |||| | Sbjct 5601 CTGAAGAAGAA-AAGCCGCTGGA-CAGCTTTAAAGAAGGTGTTCCCGCGTGCACATTTTG 5544 Query 351 AGAAAGCGCGCGGCAGTGATGAGGACAATGAGAAGTACTGCTCTAAAGAGGGTAATGTGC 410 | ||| | || | ||||| || ||||| | || ||| |||| || || || Sbjct 5543 AAGCCGCGAGAGGAACAGATGAAGAGAATGAAGATTATTGCAGCAAAGGAGGAGATTTGT 5484 Query 411 TACTTACCCTGGGCATTCCTGCGAAG---GGAAACCGGAGCGATCT-CAGCGAGGCTGTT 466 | || | | || | | ||| ||| ||| | || || ||| ||| |||| Sbjct 5483 TGCTGAAAGTTGGAAAGGCACAGAATCAAGGAGCCCGCACTGACCTGCAGAGAG-CTGTG 5425 Query 467 GCCGCGGTGAAAGCCGGAAGAGCAATGACCGAGGTCGCGCGAGACTT--CAGTGAGATAT 524 | |||||| ||||||| | ||||| ||| | ||| || | |||| || || Sbjct 5424 GATCTGGTGAAGTCCGGAAGTGGAATGAGAGAGATAGCGGAAGCGTGTCCAGTT-GA-AT 5367 Query 525 ACGTCAAATATGGG-CGTGGCTTGCGCGAC-CTGAAGCTGCTGATTGGTCAGCAGCCCCG 582 |||| || |||||| || |||| || | || | || |||||||| | || || Sbjct 5366 ACGTAAAGTATGGGGCGGGGCTCCACCGGCTCTCA--CTCCTGATTGGCTGTAAACCACG 5309 Query 583 TGACTTCAAAACGGAAGTCATCGTCATCACGGGCCCGCCCGGTTGCGGGAAGAGCCGTTG 642 |||||| ||||||||||| || || | ||||| ||||| ||| |||||||| || Sbjct 5308 TGACTTTAAAACGGAAGTGATAGTGTTGGTGGGCCGTCCCGGAACCGGAAAGAGCCGCTG 5249 Query 643 GGCAGCTGACTACCCCGGAAGTAAATTCTACAAGATGAAGGGTGAATGGTGGGACGGGTA 702 |||||| | | ||| ||| | || || |||||||| || |||||||| || || Sbjct 5248 GGCAGCCAATCAGAATGGAGCTAAGTATTATAAAATGAAGGGCGAGTGGTGGGATGGATA 5189 Query 703 CGACCACCAGGAAGTAGTCATCATTGATGACTTCTACGGCTGGCTGCCCTTCTGTGAGCT 762 ||| | |||| | || | |||||||| || || || |||||||||| ||||||| | Sbjct 5188 CGATCGGGAGGAGATCGTGGTGATTGATGATTTTTATGGTTGGCTGCCCTACTGTGAGTT 5129 Query 763 GCTGCGTGTGACCGACCGGTACCCGCATAAGGTGCCCGTGAAAGGGGCCTTTGTGGAGTT 822 ||| | |||| ||||| |||||||||||||| || ||||| ||||| | ||||||||| Sbjct 5128 ACTGAGACTGACTGACCGTTACCCGCATAAGGTACCAGTGAAGGGGGCTTATGTGGAGTT 5069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6403980631572