Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_003410.1 Length=1952 Score E Sequences producing significant alignments: (Bits) Value seq5138 122 1e-24 >seq5138 Length=6151 Score = 122 bits (134), Expect = 1e-24 Identities = 261/381 (69%), Gaps = 23/381 (6%) Strand=Plus/Minus Query 569 GGATCGAAGTTCTACAAGATGAAAGGTGACTGGTGGGATGGGTATTCCAAT---GAGGAT 625 ||| | |||| || || ||||| || || ||||||||||| || | || ||||| Sbjct 5232 GGAGCTAAGTATTATAAAATGAAGGGCGAGTGGTGGGATGGATA---CGATCGGGAGGAG 5176 Query 626 ATAGTCATCATGGATGACTTCTATGGGTGGCTGCCCTTCTGTGAAATGTTGAGATTAATG 685 || || | || ||||| || ||||| |||||||||| |||||| | ||||| | | Sbjct 5175 ATCGTGGTGATTGATGATTTTTATGGTTGGCTGCCCTACTGTGAGTTACTGAGACTGACT 5116 Query 686 GACAGGTATCCACATAAAGTTCCCGTGAAGGGGTCTTATGTGGAGTTCACGTCTAAGAAG 745 ||| | || || ||||| || || ||||||||| ||||||||||||| | | |||| Sbjct 5115 GACCGTTACCCGCATAAGGTACCAGTGAAGGGGGCTTATGTGGAGTTTGTGAGCAGGAAG 5056 Query 746 ATTGTCATAACGAGCAACACGCACCCGGAAAGTTGGTACTGTCCCGATAAGTGCTATCTG 805 ||| | || || ||||||| | |||| || ||||| | | | ||| || || Sbjct 5055 ATTATTATCACCAGCAACAAGTACCCTCAAGAGTGGTA---TAAAGCTGAGTTTGATTTG 4999 Query 806 CCTGCTTTGTTCAGGAGAATCAATAAGTG------GATGTACTGGGATGGACTGAGA-TT 858 |||| |||| || ||| | | | ||| | | ||| | || | ||| | Sbjct 4998 AGTGCTATGTTTAGAAGATTTACT-CGTGTTCTTCATTATTCTGAGGTGCAGAAAGAGTA 4940 Query 859 TGAGGATGTGCCGGATGCAATGAAGAAG--CACCCGATCAACTATTAACACTCAGCCCCG 916 || ||| |||| || | || | | |||||||||||||||| ||||| ||||| Sbjct 4939 TGTGGACATGCCAGAGG--ATCTACTTGCCCACCCGATCAACTATTGACACT-TTCCCCG 4883 Query 917 AGGAAAAGAGCGT-CTCGGAG 936 ||||||||||||| ||||||| Sbjct 4882 AGGAAAAGAGCGTCCTCGGAG 4862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6132219097032