Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_008033.1 Length=2063 Score E Sequences producing significant alignments: (Bits) Value seq5138 205 1e-49 >seq5138 Length=6151 Score = 205 bits (226), Expect = 1e-49 Identities = 435/637 (68%), Gaps = 27/637 (4%) Strand=Plus/Minus Query 145 GCCATTGTGGGAAAAGAAAAAGGAGAGCAAGGGACCCCCCACCTCCAAGGCTTTATCCAC 204 || |||||||| ||||| ||| || || || |||||||| || ||||| ||||| || Sbjct 5661 GCGATTGTGGGTAAAGAGGTAGGCGAACAGGGTACCCCCCATCTTCAAGGTTTTATGAAC 5602 Query 205 TTAAAGAAAAAAGTGAGACTC---ACAAGCCTTAAAAAAG-TGCTGCAAAGAGCTCACTG 260 | ||||| ||| || | | ||| || ||||| ||| || | | | || || | Sbjct 5601 CTGAAGAAGAAA---AGCCGCTGGACA-GCTTTAAAGAAGGTGTTCCCGCGTGCACATTT 5546 Query 261 GGAGAAGGCCCGAGGCAGTGATGAAGATAATGAGAAATACTGCAGTAAAGAGGGGGACGT 320 || || |||| | |||||||| ||||| | || ||||| |||| || || | Sbjct 5545 TGAAGCCGCGAGAGGAACAGATGAAGAGAATGAAGATTATTGCAGCAAAGGAGGAGATTT 5486 Query 321 GATACTCACGATCGGCATACCAGTGAAG---GGAAACCGGAGCGACCTTGCCG-GAGCTG 376 | | || | | || | || ||| ||| ||| | ||||| || | |||||| Sbjct 5485 GTTGCTGAAAGTTGGAAAGGCACAGAATCAAGGAGCCCGCACTGACCT-GCAGAGAGCTG 5427 Query 377 TTGCCGCTGTGAAAGCCGGAAGAGGAATGAGTGAGATCGCGCGAGAGTT--CAGTGAGAC 434 | | ||||| ||||||| |||||||| ||||| ||| || || |||| | Sbjct 5426 TGGATCTGGTGAAGTCCGGAAGTGGAATGAGAGAGATAGCGGAAGCGTGTCCAGTTGAA- 5368 Query 435 TTACGTCAGATATGGGCGGGGCCTCCG--GGATCTAGCCCTTCTGATTGGTCAGAAGCAA 492 ||||| | |||||| ||| |||| || ||| | || |||||||| || | | Sbjct 5367 -TACGTAAAGTATGGGGCGGGGCTCCACCGGCTCT--CACTCCTGATTGGCTGTAAACCA 5311 Query 493 CGTGACTTCAAGACGGAAGTTACCGTGCTTACTGGCCCTTCAGGTGTGGGCAAGTCCCGG 552 |||||||| || |||||||| | ||| | |||| | | || || ||| ||| Sbjct 5310 CGTGACTTTAAAACGGAAGTGATAGTGTTGGTGGGCCGTCCCGGAACCGGAAAGAGCCGC 5251 Query 553 TGGGC---CAATGAACAAGTTGGGACAAAGTTCTATAAAATGAAAGGTGATTGGTGGGAT 609 ||||| |||| | | ||| | |||| ||||||||||| || || ||||||||| Sbjct 5250 TGGGCAGCCAATCAGAA---TGGAGCTAAGTATTATAAAATGAAGGGCGAGTGGTGGGAT 5194 Query 610 GGATACTGCAATGAGGATATAGTAATCATTGATGATTTCTATGGGTGGATACCCTTCTGT 669 |||||| ||||| || || | ||||||||||| ||||| ||| | |||| |||| Sbjct 5193 GGATACGATCGGGAGGAGATCGTGGTGATTGATGATTTTTATGGTTGGCTGCCCTACTGT 5134 Query 670 GAGCTGCTGAGACTGTGTGATCGATACCCACATAAGGTGCCCGTCAAGGGGTCCTATGTG 729 ||| | ||||||||| ||| || ||||| |||||||| || || |||||| | |||||| Sbjct 5133 GAGTTACTGAGACTGACTGACCGTTACCCGCATAAGGTACCAGTGAAGGGGGCTTATGTG 5074 Query 730 GAGTTCAACAGCAAGCAGATCATCATTACCAGTAACA 766 ||||| |||| | |||| || || ||||| |||| Sbjct 5073 GAGTTTGTGAGCAGGAAGATTATTATCACCAGCAACA 5037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6487107689196