Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_008375.1 Length=1898 Score E Sequences producing significant alignments: (Bits) Value seq5138 129 7e-27 >seq5138 Length=6151 Score = 129 bits (142), Expect = 7e-27 Identities = 251/360 (70%), Gaps = 18/360 (5%) Strand=Plus/Minus Query 390 GTGAAAGCCGGAAGTCGAATGGTGGATATCGCGCGAGAGTT--CAGT-GAAGTCTACGTC 446 ||||| |||||||| ||||| || || ||| || || |||| ||| ||||| Sbjct 5418 GTGAAGTCCGGAAGTGGAATGAGAGAGATAGCGGAAGCGTGTCCAGTTGAA---TACGTA 5362 Query 447 AAGTATGGG-CGTGGCTT-ACGTGAACTGGCGCTTCTGATTGGACAGAAACCGCGAGATT 504 ||||||||| || |||| || | || | || |||||||| ||||| || || | Sbjct 5361 AAGTATGGGGCGGGGCTCCACCGGCTCT--CACTCCTGATTGGCTGTAAACCACGTGACT 5304 Query 505 TCAAAACCGAATTTATCGTTGTCACCGGTCCGTCG-GGCGTGGGCAAGAGCCGTTATGCT 563 | ||||| ||| | || || || || ||||| || || |||||||| | || Sbjct 5303 TTAAAACGGAAGTGATAGT-GTTGGTGGGCCGTCCCGGAACCGGAAAGAGCCGCTGGGCA 5245 Query 564 ---AATGAGTATCCTGGCACTAAGTTTTATAAGATGAAAGGGGACTGGTGGGACGGCTAC 620 ||| || || || |||||| |||||| ||||| || || |||||||| || ||| Sbjct 5244 GCCAATCAGAAT---GGAGCTAAGTATTATAAAATGAAGGGCGAGTGGTGGGATGGATAC 5188 Query 621 TCTAACGAGGATGTTGTCGTTATTGACGACTTTTATGGATGGATACCTTTTTGTGAGTTA 680 | ||||| | || || ||||| || |||||||| ||| | || | ||||||||| Sbjct 5187 GATCGGGAGGAGATCGTGGTGATTGATGATTTTTATGGTTGGCTGCCCTACTGTGAGTTA 5128 Query 681 CTGCGTCTCACTGATAGGTATCCACATAAGGTTCCTGTGAAAGGATCGTATGTGGAGTTT 740 ||| | || ||||| | || || |||||||| || ||||| || | |||||||||||| Sbjct 5127 CTGAGACTGACTGACCGTTACCCGCATAAGGTACCAGTGAAGGGGGCTTATGTGGAGTTT 5068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5959570592736