Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_008521.1 Length=2035 Score E Sequences producing significant alignments: (Bits) Value seq5138 125 9e-26 >seq5138 Length=6151 Score = 125 bits (138), Expect = 9e-26 Identities = 423/641 (66%), Gaps = 31/641 (5%) Strand=Plus/Minus Query 255 GTTTGCGATAATCGGCAAAGAAGTTGGCGAAAGCGGTACTCCTCATCTGCAAGGCTTCAT 314 ||| ||||| | || ||||| || |||||| ||||| || ||||| ||||| || || Sbjct 5665 GTTCGCGATTGTGGGTAAAGAGGTAGGCGAACAGGGTACCCCCCATCTTCAAGGTTTTAT 5606 Query 315 GCATTTTAAGCAAAAGCAGCGGCTT-ACCGCTCTAAAGAAACTTTTTCCTCGCGCGCATT 373 | | | ||| | || ||| ||| || ||| ||||||| | || || || || |||| Sbjct 5605 GAACCTGAAGAAGAAA-AGCCGCTGGACAGCTTTAAAGAAGGTGTTCCCGCGTGCACATT 5547 Query 374 TTGAGAAAGCTCGCGGCAGTGATCAGCAGAATGCTGATTATTGTGGTAAAGACGGCGAAA 433 |||| || | || | ||| | |||||| |||||||| | |||| || || Sbjct 5546 TTGAAGCCGCGAGAGGAACAGATGAAGAGAATGAAGATTATTGCAGCAAAGGAGGAGATT 5487 Query 434 TACTTACCATGA---TCGGTA---CTCCGAGTGATAATAATCCG-AGTGATCTTGCGGGA 486 | || | ||| | || | | | || | | | | ||| | ||| || | || Sbjct 5486 TG-TTGC--TGAAAGTTGGAAAGGCACAGAATCA-AGGAGCCCGCACTGACCTGCAGAGA 5431 Query 487 GCTGTTGCCGCTGTGAAACGCGGAAGTCAAATGAGTGAAATCGCGCGAGAGTT--CAGT- 543 ||||| | ||||| ||||||| |||||| || || ||| || || |||| Sbjct 5430 GCTGTGGATCTGGTGAAGTCCGGAAGTGGAATGAGAGAGATAGCGGAAGCGTGTCCAGTT 5371 Query 544 GAAGTCTACGTCAAGTATGGG-CGGGGC--CTCCGTGATCTCCGGTTGCTGATTGGTTGC 600 ||| ||||| ||||||||| |||||| | ||| | |||| | |||||||| || Sbjct 5370 GAA---TACGTAAAGTATGGGGCGGGGCTCCACCG-GCTCTCAC--TCCTGATTGGCTGT 5317 Query 601 CCGCCCCGCGATTTCAAAACAGAAGTCATCGTTCTGATTGGCCCACCTGGCTGTGGCAAG 660 || || || || ||||| ||||| || || || | |||| || || || ||| Sbjct 5316 AAACCACGTGACTTTAAAACGGAAGTGATAGTGTTGGTGGGCCGTCCCGGAACCGGAAAG 5257 Query 661 TCAAAATTGGC---CAATGAGATGGAAGGGTCTAAGTTCTACAAGATGAAAGGTGATTGG 717 | ||| |||| ||| | || |||||| || || ||||| || || ||| Sbjct 5256 AGCCGCTGGGCAGCCAATCAGAATGGAG---CTAAGTATTATAAAATGAAGGGCGAGTGG 5200 Query 718 TGGGATGGTTATGACAATCAAGATATTGTCATAATCGATGACTTCTACGGTTGGCTGCCG 777 |||||||| || || | || || || | || ||||| || || ||||||||||| Sbjct 5199 TGGGATGGATACGATCGGGAGGAGATCGTGGTGATTGATGATTTTTATGGTTGGCTGCCC 5140 Query 778 TACTGTGAGTGCCTACGTCTGTGTGACCGGTACCCTCACCGTGTGCCTGTGAAAGGTGCC 837 |||||||||| || | ||| |||||| ||||| || || || ||||| || || Sbjct 5139 TACTGTGAGTTACTGAGACTGACTGACCGTTACCCGCATAAGGTACCAGTGAAGGGGGCT 5080 Query 838 TACGTGGAATTCACCAGCAAGAAGATTGTGTTTACCAGCAA 878 || ||||| || |||| ||||||| | | |||||||| Sbjct 5079 TATGTGGAGTTTGTGAGCAGGAAGATTATTATCACCAGCAA 5039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6397586242524