Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_008522.1 Length=1962 Score E Sequences producing significant alignments: (Bits) Value seq5138 168 8e-39 >seq5138 Length=6151 Score = 168 bits (186), Expect = 8e-39 Identities = 490/733 (67%), Gaps = 30/733 (4%) Strand=Plus/Minus Query 50 AGCCCTTGCAAGCGGTGGTGCTTTACCCTCAACAACCCGACTGAGGAGGAGATAGAGAGA 109 || |||||| || |||||||||||| | ||||| || ||||| |||||||| ||| | Sbjct 5757 AGTCCTTGCCGTCGCTGGTGCTTTACCTTGAACAATCCTACTGAAGAGGAGATCCAGACA 5698 Query 110 GTGAAA-AATCTGTCTCCGAGTGAGTA---TCACTATGCGATAGTCGGGAAAGAAAAGGG 165 || | ||| || ||||| ||| | | | | ||||| || || ||||| || Sbjct 5697 GTTCAGCAATGGATCACCGAG-GAGAAGGTTAAGTTCGCGATTGTGGGTAAAGAGGTAGG 5639 Query 166 AGAACAAGGCACCCCGCATTTGCAAGGGTTCCTGCATCTGAAAAAGAAGCAGCGGTTGAA 225 ||||| || ||||| ||| | ||||| || || | ||||| ||||| ||| | || | Sbjct 5638 CGAACAGGGTACCCCCCATCTTCAAGGTTTTATGAACCTGAAGAAGAAA-AGCCGCTGGA 5580 Query 226 GCAAATGAAAGA-GCTGATTCCCCGCGCGCATTTCGAGAGAGCCCGTGGTTCCGATGAGG 284 | ||||| | || | || || || ||||| || || | || | ||||| | Sbjct 5579 CAGCTTTAAAGAAGGTGTTCCCGCGTGCACATTTTGAAGCCGCGAGAGGAACAGATGAAG 5520 Query 285 ACAATGAGCAGTATTGCGGCAAGGAGGGGGACGTTATACTCACCATTGG---GGTTCCT- 340 | ||||| | |||||| |||| | || || | | || | |||| || | Sbjct 5519 AGAATGAAGATTATTGCAGCAAAGGAGGAGATTTGTTGCTGAAAGTTGGAAAGGCACAGA 5460 Query 341 -TCAAAGGGTAACCGGAGTGACCTTGCCG-GAGCTGTTGCCGCCGTGAAAGCCGGAAGAG 398 |||| | | ||| | |||||| || | ||||||| | ||||| ||||||| | Sbjct 5459 ATCAAGGAGC--CCGCACTGACCT-GCAGAGAGCTGTGGATCTGGTGAAGTCCGGAAGTG 5403 Query 399 GTATGGCCGAAGTCGCGCGAGAGTT--CAGTCTAGCCTACGTCAGATATGGG-CGGGGC- 454 | ||| || | ||| || || |||| | ||||| | |||||| |||||| Sbjct 5402 GAATGAGAGAGATAGCGGAAGCGTGTCCAGTTGAA--TACGTAAAGTATGGGGCGGGGCT 5345 Query 455 CTGCGTGATCTTGCGCTGCTGATTGGCCAGAAGCCCCGTGACTTCAAAACGGAAGTCATA 514 | | | ||| | || ||||||||| || || |||||||| ||||||||||| ||| Sbjct 5344 CCACCGGCTCT--CACTCCTGATTGGCTGTAAACCACGTGACTTTAAAACGGAAGTGATA 5287 Query 515 GTGCTGACCGGCCCTAGTGGGTGTGGCAAATCCCGCTGGGCCAATGAACAAGAA-GGAAC 573 ||| || |||| | || || || ||||||||| | || |||| ||| | Sbjct 5286 GTGTTGGTGGGCCGTCCCGGAACCGGAAAGAGCCGCTGGGC-AGCCAATCAGAATGGAGC 5228 Query 574 TAAGTTTTATAAAATGAAAGGTGATTGGTGGGACGGGTATTCAAACG--AAGACATGGTC 631 ||||| |||||||||||| || || |||||||| || || | | || | || || || Sbjct 5227 TAAGTATTATAAAATGAAGGGCGAGTGGTGGGATGGATA--CGATCGGGAGGAGATCGTG 5170 Query 632 ATCATAGATGACTTTTATGGGTGGATCCCGTTCTGTGAACTGCTCCGCCTCTGTGACCGT 691 | || ||||| |||||||| ||| | || | |||||| | || | || ||||||| Sbjct 5169 GTGATTGATGATTTTTATGGTTGGCTGCCCTACTGTGAGTTACTGAGACTGACTGACCGT 5110 Query 692 TACCCACACAAGGTGCCCGTTAAGGGCAGCTATGTGGAGTTCACGTCTAAGAAAATAATA 751 ||||| || ||||| || || ||||| ||||||||||| | | ||| || || Sbjct 5109 TACCCGCATAAGGTACCAGTGAAGGGGGCTTATGTGGAGTTTGTGAGCAGGAAGATTATT 5050 Query 752 ATTACAAGCAACA 764 || || ||||||| Sbjct 5049 ATCACCAGCAACA 5037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6164191042272