Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_026945.1 Length=1982 Score E Sequences producing significant alignments: (Bits) Value seq5138 172 7e-40 >seq5138 Length=6151 Score = 172 bits (190), Expect = 7e-40 Identities = 444/659 (67%), Gaps = 27/659 (4%) Strand=Plus/Minus Query 143 GCGATAGTCGGGAAAGAGAAAGGAGAGCAAGGGACACCGCATTTGCAGGGCTTCCTGCAT 202 ||||| || || |||||| ||| || || || || || ||| | || || || || | Sbjct 5661 GCGATTGTGGGTAAAGAGGTAGGCGAACAGGGTACCCCCCATCTTCAAGGTTTTATGAAC 5602 Query 203 TTGAAAAAGAAGGTTCGACTGAACCAAATGAA-GCAGTTGATACCGCGCGCGCATTTCGA 261 |||| ||||| || ||| || | || | || || | ||||| || ||||| || Sbjct 5601 CTGAAGAAGAAAAGCCG-CTGGACAGCTTTAAAGAAGGTGTTCCCGCGTGCACATTTTGA 5543 Query 262 GATCGCCCGGGGTTCCGATGAGGATAATGAGCAGTATTGCAGCAAAGAAGGGGACGTGAT 321 ||| | || | ||||| || ||||| | ||||||||||||| ||| || || | Sbjct 5542 AGCCGCGAGAGGAACAGATGAAGAGAATGAAGATTATTGCAGCAAAGGAGGAGATTTGTT 5483 Query 322 ACTTACCATTGGG--GCCCCCGCAA-AAGGCAATCGGAGTGACCTTGCCG-GAGCTGTTG 377 || | |||| | | | | | |||| || | |||||| || | ||||||| | Sbjct 5482 GCTGAAAGTTGGAAAGGCACAGAATCAAGGAGCCCGCACTGACCT-GCAGAGAGCTGTGG 5424 Query 378 CCGCCGTGAAAGCCGGAAGACCAATGACGGAAGTCGCGCGAGAGTT--CAGT-GAAGCCT 434 ||||| ||||||| ||||| || | ||| || || |||| ||| | Sbjct 5423 ATCTGGTGAAGTCCGGAAGTGGAATGAGAGAGATAGCGGAAGCGTGTCCAGTTGAA---T 5367 Query 435 ACGTCAAGTG-GGGGCGTGGCCTGAA-GGATCTGGCACTGATGATTGGCCAGAAGCCCCG 492 |||| |||| |||||| ||| | || ||| |||| |||||||| || || || Sbjct 5366 ACGTAAAGTATGGGGCGGGGCTCCACCGGCTCT--CACTCCTGATTGGCTGTAAACCACG 5309 Query 493 TGACTTCAAGACGGAGGTGATTGTGTTGACCGGCCCCTCGGGGGTGGGGAAGAGCCGCTG 552 |||||| || ||||| ||||| |||||| |||| | || || ||||||||||| Sbjct 5308 TGACTTTAAAACGGAAGTGATAGTGTTGGTGGGCCGTCCCGGAACCGGAAAGAGCCGCTG 5249 Query 553 GGC---CAATGAACAGGAAGGTACGAAATACTACAAGATGAAGGGTGATTGGTGGGACGG 609 ||| |||| ||| | || | || || || || |||||||| || |||||||| || Sbjct 5248 GGCAGCCAAT---CAGAATGGAGCTAAGTATTATAAAATGAAGGGCGAGTGGTGGGATGG 5192 Query 610 ATATTCAAACG--AAGACATCGTGGTGATTGACGACTTCTATGGGTGGATCCCGTTCTGT 667 ||| | | || | || |||||||||||||| || || ||||| ||| | || | |||| Sbjct 5191 ATA--CGATCGGGAGGAGATCGTGGTGATTGATGATTTTTATGGTTGGCTGCCCTACTGT 5134 Query 668 GAGCTGCTCCGCCTTTGTGATCGTTATCCCCACAAAGTGCCAGTCAAAGGCAGCTACGTG 727 ||| | || | || ||| ||||| || || || || ||||| || || || ||| Sbjct 5133 GAGTTACTGAGACTGACTGACCGTTACCCGCATAAGGTACCAGTGAAGGGGGCTTATGTG 5074 Query 728 GAGTTTACGTCAAAGAAGATCATCATCACGAGCAACACCCACCCGAACCATTGGTATAA 786 |||||| | | |||||| || ||||| ||||||| |||| | | |||||||| Sbjct 5073 GAGTTTGTGAGCAGGAAGATTATTATCACCAGCAACAAGTACCCTCAAGAGTGGTATAA 5015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6228134932752