Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_030199.1 Length=1939 Score E Sequences producing significant alignments: (Bits) Value seq5138 210 3e-51 >seq5138 Length=6151 Score = 210 bits (232), Expect = 3e-51 Identities = 472/690 (68%), Gaps = 32/690 (5%) Strand=Plus/Minus Query 75 CGTTGGTGCTTTACCCTTAACAACCCGACAGATGAGGAGGTCCAGA-AGATAAAAGACAT 133 || |||||||||||| | ||||| || || || |||||| |||||| || | | | || Sbjct 5745 CGCTGGTGCTTTACCTTGAACAATCCTACTGAAGAGGAGATCCAGACAGTTCA--GCAAT 5688 Query 134 GAATC--CGAGTGAGTACC---ACTATGCTATAGTTGGGAAAGAACGAGGAGAGCAAGGG 188 | ||| |||| ||| | | | || || || || ||||| ||| || || || Sbjct 5687 GGATCACCGAG-GAGAAGGTTAAGTTCGCGATTGTGGGTAAAGAGGTAGGCGAACAGGGT 5629 Query 189 ACCCCTCATCTGCAAGGGTTTTTGCACCTAAAGTGCAAAAAGAGACTTAACCAGCTG--A 246 ||||| ||||| ||||| ||| || |||| ||| |||| | || || |||| | Sbjct 5628 ACCCCCCATCTTCAAGGTTTTATGAACCTGAAGAAGAAAAGCCG-CTGGAC-AGCTTTAA 5571 Query 247 AGGAGTTCTTAGCGCGTGCGCATTGGGAGAAGGCCCGTGGTTCAGATGAAGACAATGAGG 306 || || | || ||||||| |||| || || | || |||||||||| ||||| | Sbjct 5570 AGAAGGTGTTCCCGCGTGCACATTTTGAAGCCGCGAGAGGAACAGATGAAGAGAATGAAG 5511 Query 307 CCTATTGCTCTAAGGAAGGGGAAGTTATACTTACCCTTGGCATGCCGG-----CAAAGGG 361 |||||| || | ||| || | | || | |||| | | | ||| | | Sbjct 5510 ATTATTGCAGCAAAGGAGGAGATTTGTTGCTGAAAGTTGGAAAGGCACAGAATCAAGGAG 5451 Query 362 CAACCGGAGCGACCTGTCGGGAGCTGTTGCCGCCGTGAAAGCCGGAAGAGCAATGAGCGA 421 | ||| | |||||| | ||||||| | ||||| ||||||| | |||||| || Sbjct 5450 C--CCGCACTGACCTGCAGAGAGCTGTGGATCTGGTGAAGTCCGGAAGTGGAATGAGAGA 5393 Query 422 GATCGCGCGAGAGTT--CAGT-GAAGTTTACGTCAAGTATGGG-CGTGGC-CTAAGAGAT 476 ||| ||| || || |||| ||| ||||| ||||||||| || ||| | | | | Sbjct 5392 GATAGCGGAAGCGTGTCCAGTTGAA---TACGTAAAGTATGGGGCGGGGCTCCACCGGCT 5336 Query 477 CTGGCTCTCCTGATTGGTCAGAAACCACGTGACTTCAAGACTGACGTCATACTGATAACT 536 || | ||||||||||| |||||||||||||| || || || || ||| || | | Sbjct 5335 CT--CACTCCTGATTGGCTGTAAACCACGTGACTTTAAAACGGAAGTGATAGTGTTGG-T 5279 Query 537 GGCCCCTCGGGGGTGGGGAAA-AGCCGTTGGGCATTTGAATATCCCGGAAGCAAGTTCTA 595 || || || || ||||| ||||| |||||| | | ||| |||| || Sbjct 5278 GGGCCGTCCCGGAACCGGAAAGAGCCGCTGGGCAGCCAATCAGAATGGAGCTAAGTATTA 5219 Query 596 TAAAATGAAGGGGGAGTGGTGGGACGGATATGCAAATGAGGATGTTGTCGTCATTGATGA 655 |||||||||||| ||||||||||| ||||| | ||||| | || || |||||||| Sbjct 5218 TAAAATGAAGGGCGAGTGGTGGGATGGATACGATCGGGAGGAGATCGTGGTGATTGATGA 5159 Query 656 CTTTTATGGCTGGCTGCCATTTTGTGAGCTGTTGAGACTGACTGATCGTTACCCACACAA 715 |||||||| |||||||| | |||||| | ||||||||||||| |||||||| || || Sbjct 5158 TTTTTATGGTTGGCTGCCCTACTGTGAGTTACTGAGACTGACTGACCGTTACCCGCATAA 5099 Query 716 AGTGCCCGTGAAAGGCTCATATGTGGAGTT 745 || || ||||| || | ||||||||||| Sbjct 5098 GGTACCAGTGAAGGGGGCTTATGTGGAGTT 5069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6090655568220