Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_002361.1 Length=2037 Score E Sequences producing significant alignments: (Bits) Value seq152 125 9e-26 >seq152 Length=1326514 Score = 125 bits (138), Expect = 9e-26 Identities = 252/368 (68%), Gaps = 27/368 (7%) Strand=Plus/Plus Query 461 GCTGTTGCCGCGGTGAAAGCCGGAAGAGCAATGACCGAGGTCGCGCGAGACTTCAGTGAG 520 ||| ||||||| |||| ||||||| |||| | || |||||| ||| ||| |||| Sbjct 442118 GCTTTTGCCGCCATGAAGGCCGGAACTAAAATGGCGGAAATCGCGCAAGAGTTCCCTGAG 442177 Query 521 ATATACGTCAAATATGGGCGTGGCTTGCGCGACCTGAAGCTGCTGATTGGTCAGCAGCCC 580 || ||||| | | || |||| | | || |||| || |||||||| ||||| || Sbjct 442178 GCCTATGTCAAGTGGGCGCCTGGCCTCAGAGATCTGAGACTCCTGATTGGCCAGCAACCG 442237 Query 581 CGTGACTTCAAAACGGAAGTCATCGTCATCACGGGCCCGCCCGGTTGCGGG-AAGAGCCG 639 | | || |||| |||| | ||| | | ||||| || || || | | |||||||| Sbjct 442238 CA--ATTTTGAAACTGAAGCCGACGTGCTGATTGGCCCACCAGGGTGAGAGCAAGAGCCG 442295 Query 640 TTGGGCAGCTGACTACCCCGGAAGTAAA--TTCTACAAGATGAAGGGTGAATGGTGGGA- 696 |||||| || || || || ||| | | | ||||| | || ||||||||||| Sbjct 442296 TTGGGCTGC---CTCCCAAGGGAGTCACACTCCCACAAGGCCCAAGGAGAATGGTGGGAA 442352 Query 697 -----CGGGTACGACCACCA---GGAAGT---AGTCA------TCATTGATGACTTCTAC 739 |||| | | ||| | ||||| || || |||| ||||||||||| Sbjct 442353 AATGGCGGG-ATGGCCATGAAGGGGAAGACAAAGACAGAGCAGTCATGGATGACTTCTAT 442411 Query 740 GGCTGGCTGCCCTTCTGTGAGCTGCTGCGTGTGACCGACCGGTACCCGCATAAGGTGCCC 799 |||||||| || |||||||||||||| || |||| ||| | || || |||||||| ||| Sbjct 442412 GGCTGGCTCCCATTCTGTGAGCTGCTCCGGCTGACTGACTGCTATCCACATAAGGTCCCC 442471 Query 800 GTGAAAGG 807 ||||| || Sbjct 442472 GTGAATGG 442479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6409190162164