Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_003410.1 Length=1952 Score E Sequences producing significant alignments: (Bits) Value seq152 122 1e-24 >seq152 Length=1326514 Score = 122 bits (134), Expect = 1e-24 Identities = 296/441 (67%), Gaps = 33/441 (7%) Strand=Plus/Plus Query 351 ACCGGAGTGACCTTGCCGGAGCTGTTGCCGCCGTGAAGGCCGGAAGGAGAATGGTGGATA 410 |||||| | ||| | |||||| |||||||| |||||||||||| | ||||| ||| | Sbjct 442098 ACCGGACTCGCCTCACGGGAGCTTTTGCCGCCATGAAGGCCGGAACTAAAATGGCGGAAA 442157 Query 411 TCGCGCGAGAGTTCAGCGAGATCTACGTCAAGTATGGGCGTGGTCTGAGGGATTTGGCCC 470 |||||| ||||||| ||| ||| ||||||| | || ||| || || ||| || | Sbjct 442158 TCGCGCAAGAGTTCCCTGAGGCCTATGTCAAGTGGGCGCCTGGCCTCAGAGATCTGAGAC 442217 Query 471 TGATGATTGGACAGAAACCCCGTGACTTCAAGACGGAAGTCGTCGTTATCACGGGGCCTT 530 | ||||||| ||| || ||| | || | || |||| || ||| | | || || Sbjct 442218 TCCTGATTGGCCAGCAA--CCGCAATTTTGAAACTGAAGCCGACGTGCTGATTGGCCCAC 442275 Query 531 CCGGG-GTGGGCA--AGTCG-AGACTTGCCTCTGAAATGGAAGGATCGAAGTTCTACAAG 586 | ||| | | ||| || || | |||||| || || || || | | | ||||| Sbjct 442276 CAGGGTGAGAGCAAGAGCCGTTGGGCTGCCTCCCAA--GGGAG--TCACACTCCCACAAG 442331 Query 587 ATGAAAGGTGACTGGTGGG---ATG--GGTATTCCAAT------GAGGATATAGTCA--- 632 |||| || ||||||| ||| || || | || || || | || || Sbjct 442332 GCCCAAGGAGAATGGTGGGAAAATGGCGGGATGGCCATGAAGGGGAAGACAAAGACAGAG 442391 Query 633 ---TCATGGATGACTTCTATGGGTGGCTGCCCTTCTGTGAAATGTTGAGATTAATGGACA 689 ||||||||||||||||||| ||||| || |||||||| || | | | | ||| Sbjct 442392 CAGTCATGGATGACTTCTATGGCTGGCTCCCATTCTGTGAGCTGCTCCGGCTGACTGACT 442451 Query 690 GGTATCCACATAAAGTTCCCGTGAAGGG------GTCTTATGTGGAGTTCACGTCTAAGA 743 | ||||||||||| || |||||||| || ||| |||||| ||||| |||| Sbjct 442452 GCTATCCACATAAGGTCCCCGTGAATGGAATTCCCACTTCTGTGGAATTCACAAGCAAGA 442511 Query 744 AGATTGTCATAACGAGCAACA 764 |||| |||| || ||||||| Sbjct 442512 AGATCATCATGACCAGCAACA 442532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6137207554184