Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_008033.1 Length=2063 Score E Sequences producing significant alignments: (Bits) Value seq152 136 5e-29 >seq152 Length=1326514 Score = 136 bits (150), Expect = 5e-29 Identities = 398/602 (66%), Gaps = 32/602 (5%) Strand=Plus/Plus Query 192 AGGCTTTATCCACTTAAAGAAAAAAGTGAGACTCACAAGCCTTAAAAAAGTGCTGCAAAG 251 ||||| | | || | ||||| |||| ||||| ||| || ||||||||| ||| | Sbjct 441936 AGGCTATGTGCAACTGAAGAAGAAAGAAAGACTGACAGCACTGAAAAAAGTGTTGCT--G 441993 Query 252 AGCTCACTGGGAGAAGGCCCGAGGCAGTGATGAAGATAATGAGAAATACTGCAGTAAAGA 311 ||||||| ||| ||| | || ||||||| |||||| | | |||||| |||| Sbjct 441994 AGCTCACCTGGAAGTTGCCTGTGGGTCCCATGAAGACAATGAGCAGTCCTGCAGCCAAGA 442053 Query 312 GGGGGACGTGATACTCACGATCGGCATACCAGTGA----AGGGAAACCGGAGCGACCTTG 367 | |||||| | | | | || | | ||| |||| | ||||| ||| Sbjct 442054 ACGTGACGTGTTTTGCCAGGTAGGGGTCTCTGTGGGCTGAGGGCA-CCGGACTCGCCTCA 442112 Query 368 CCGGAGCTGTTGCCGCTGTGAAAGCCGGAAGAGGAATGAGTGAGATCGCGCGAGAGTTCA 427 | |||||| ||||||| |||| ||||||| |||| || ||||||| ||||||| Sbjct 442113 CGGGAGCTTTTGCCGCCATGAAGGCCGGAACTAAAATGGCGGAAATCGCGCAAGAGTTCC 442172 Query 428 GTGAGACTTACGTCAGATATGGGCGGGGCCTCCGGGATCTAGCCCTTCTGATTGGTCAGA 487 |||| | || |||| | | || |||||| | ||||| || |||||||| ||| Sbjct 442173 CTGAGGCCTATGTCAAGTGGGCGCCTGGCCTCAGAGATCTGAGACTCCTGATTGGCCAGC 442232 Query 488 AGCAACGTGACTTCAAGACGGAAGTTACCGTGCTTACTGGCCCTTCAGG-TGTGGGCAAG 546 | | || | || | || |||| |||||| | |||||| |||| || | ||||| Sbjct 442233 AAC--CGCAATTTTGAAACTGAAGCCGACGTGCTGATTGGCCCACCAGGGTGAGAGCAAG 442290 Query 547 TCCCGGTGGGC-------CAATGAA--CAAGTTGGGACAAAGTTCTATAA-AATGAAAGG 596 ||| ||||| ||| | | || | |||| | | | | |||| || Sbjct 442291 AGCCGTTGGGCTGCCTCCCAAGGGAGTCACACTCCCACAAGGCCCAAGGAGAATGGTGGG 442350 Query 597 TGATTGGTGGGATGG--AT--ACTGCAATG--AGGATATAGTAATCATTGATGATTTCTA 650 | ||| ||||||| || | | || | || | || | |||| ||||| ||||| Sbjct 442351 AAAATGGCGGGATGGCCATGAAGGGGAAGACAAAGACAGAGCAGTCATGGATGACTTCTA 442410 Query 651 TGGGTGGATACCCTTCTGTGAGCTGCTGAGACTGTGTGATCGATACCCACATAAGGTGCC 710 ||| ||| | || |||||||||||||| | ||| ||| | || ||||||||||| || Sbjct 442411 TGGCTGGCTCCCATTCTGTGAGCTGCTCCGGCTGACTGACTGCTATCCACATAAGGTCCC 442470 Query 711 CGTCAAGGG--GTCC----TATGTGGAGTTCAACAGCAAGCAGATCATCATTACCAGTAA 764 ||| || || ||| | |||||| |||| |||||| |||||||||| ||||| || Sbjct 442471 CGTGAATGGAATTCCCACTTCTGTGGAATTCACAAGCAAGAAGATCATCATGACCAGCAA 442530 Query 765 CA 766 || Sbjct 442531 CA 442532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6492384842252