Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_008521.1 Length=2035 Score E Sequences producing significant alignments: (Bits) Value seq152 111 2e-21 >seq152 Length=1326514 Score = 111 bits (122), Expect = 2e-21 Identities = 285/428 (67%), Gaps = 41/428 (10%) Strand=Plus/Plus Query 482 CGGGAGCTGTTGCCGCTGTGAAACGCGGAAGTCAAATGAGTGAAATCGCGCGAGAGTTCA 541 |||||||| ||||||| |||| ||||| | ||||| |||||||||| ||||||| Sbjct 442113 CGGGAGCTTTTGCCGCCATGAAGGCCGGAACTAAAATGGCGGAAATCGCGCAAGAGTTCC 442172 Query 542 GTGAAGTCTACGTCAAGTATGGGCGGGGCCTCCGTGATCTCCGGTTGCTGATTGGTTGCC 601 ||| | ||| ||||||| | || |||||| | ||||| | | |||||||| || Sbjct 442173 CTGAGGCCTATGTCAAGTGGGCGCCTGGCCTCAGAGATCTGAGACTCCTGATTGG---CC 442229 Query 602 CGCC-CCGCGATTTCAAAACAGAAGTCATCGTTCTGATTGGCCCACCTGGCTGTGGCAAG 660 || |||| |||| |||| |||| | ||| |||||||||||||| || || | || Sbjct 442230 AGCAACCGCAATTTTGAAACTGAAGCCGACGTGCTGATTGGCCCACCAGGGTGAG---AG 442286 Query 661 TCAAAATTGGCCAATGAGATG-----GAAGG--GTCTAAGTTCTA-------CAAGATGA 706 ||| | ||| || | || |||| ||| | | | | |||| || Sbjct 442287 -CAAGA---GCCGTTGGGCTGCCTCCCAAGGGAGTCACACTCCCACAAGGCCCAAGGAGA 442342 Query 707 AAGGTG----ATTGGTGGGATGGTTATGACAATCAAGATATTGTCA------TAATCGAT 756 | |||| | ||| ||||||| |||| |||| | | || | || ||| Sbjct 442343 ATGGTGGGAAAATGGCGGGATGGCCATGAAGGGGAAGACAAAGACAGAGCAGTCATGGAT 442402 Query 757 GACTTCTACGGTTGGCTGCCGTACTGTGAGTGCCTACGTCTGTGTGACCGGTACCCTCAC 816 |||||||| || ||||| || | ||||||| || || ||| |||| | || || || Sbjct 442403 GACTTCTATGGCTGGCTCCCATTCTGTGAGCTGCTCCGGCTGACTGACTGCTATCCACAT 442462 Query 817 CGTGTGCCTGTGAAAGG--TGCCTAC----GTGGAATTCACCAGCAAGAAGATTGTGTTT 870 || || ||||| || | || || ||||||||||| ||||||||||| | | Sbjct 442463 AAGGTCCCCGTGAATGGAATTCCCACTTCTGTGGAATTCACAAGCAAGAAGATCATCATG 442522 Query 871 ACCAGCAA 878 |||||||| Sbjct 442523 ACCAGCAA 442530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6402790571388