Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_008522.1 Length=1962 Score E Sequences producing significant alignments: (Bits) Value seq152 116 5e-23 >seq152 Length=1326514 Score = 116 bits (128), Expect = 5e-23 Identities = 359/549 (65%), Gaps = 40/549 (7%) Strand=Plus/Plus Query 266 GCCCGTGGTTCCGATGAGGACAATGAGCAGTATTGCGGCAAGGAGGGGGACGTTATACTC 325 ||| |||| ||| |||| ||||||||||||| ||| || | || | ||||| | | Sbjct 442010 GCCTGTGGGTCCCATGAAGACAATGAGCAGTCCTGCAGCCAAGAACGTGACGTGTT--TT 442067 Query 326 ACCA--TTGGGGTTCCT----TCAAAGGGTAACCGGAGTGACCTTGCCGGAGCTGTTGCC 379 ||| | ||||| || | |||| |||||| | ||| | |||||| ||||| Sbjct 442068 GCCAGGTAGGGGTCTCTGTGGGCTGAGGG-CACCGGACTCGCCTCACGGGAGCTTTTGCC 442126 Query 380 GCCGTGAAAGCCGGAAGAGGTATGGCCGAAGTCGCGCGAGAGTTCAGTCTAGCCTACGTC 439 ||| |||| ||||||| ||||| ||| |||||| ||||||| | ||||| ||| Sbjct 442127 GCCATGAAGGCCGGAACTAAAATGGCGGAAATCGCGCAAGAGTTCCCTGAGGCCTATGTC 442186 Query 440 AGATATGGGCGGGGCCTGCGTGATCTTGCGCTGCTGATTGGCCAGAAGCCCCGTGACTTC 499 | | | || ||||| | ||||| || |||||||||||| | ||| | || Sbjct 442187 AAGTGGGCGCCTGGCCTCAGAGATCTGAGACTCCTGATTGGCCAGCA--ACCGCAATTTT 442244 Query 500 AAAACGGAAGTCATAGTGCTGACCGGCCCTAGTGGGTGTG-GCAAATCCCGCTGGGCCAA 558 |||| |||| | ||||||| ||||| ||||| | |||| ||| ||||| Sbjct 442245 GAAACTGAAGCCGACGTGCTGATTGGCCCACCAGGGTGAGAGCAAGAGCCGTTGGGC--- 442301 Query 559 TGAACAAGAAGGAACTAAGTTTTATAAAATG--AAAGGTGATTGGTGGGA------CGGG 610 || |||| | | | | | || | |||| || |||||||| |||| Sbjct 442302 TGCCTCCCAAGGGAGTCACACTCCCACAAGGCCCAAGGAGAATGGTGGGAAAATGGCGGG 442361 Query 611 -----TATTCAAACGAAGACATGGTCA------TCATAGATGACTTTTATGGGTGGATCC 659 || | ||||||| | || |||| |||||||| ||||| ||| ||| Sbjct 442362 ATGGCCATGAAGGGGAAGACAAAGACAGAGCAGTCATGGATGACTTCTATGGCTGGCTCC 442421 Query 660 CGTTCTGTGAACTGCTCCGCCTCTGTGACCGTTACCCACACAAGGTGCCCGTTAAGGG-- 717 | |||||||| |||||||| || |||| | || ||||| ||||| ||||| || || Sbjct 442422 CATTCTGTGAGCTGCTCCGGCTGACTGACTGCTATCCACATAAGGTCCCCGTGAATGGAA 442481 Query 718 ----CAGCTATGTGGAGTTCACGTCTAAGAAAATAATAATTACAAGCAACACCCACCCAG 773 || | |||||| ||||| ||||| || || || || ||||||| |||| Sbjct 442482 TTCCCACTTCTGTGGAATTCACAAGCAAGAAGATCATCATGACCAGCAACAAGATGCCAG 442541 Query 774 ATCACTGGT 782 | || |||| Sbjct 442542 ACCAGTGGT 442550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6169205508064