Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_026945.1 Length=1982 Score E Sequences producing significant alignments: (Bits) Value seq152 152 6e-34 >seq152 Length=1326514 Score = 152 bits (168), Expect = 6e-34 Identities = 355/530 (67%), Gaps = 38/530 (7%) Strand=Plus/Plus Query 266 GCCCGGGGTTCCGATGAGGATAATGAGCAGTATTGCAGCAAAGAAGGGGACGTGATACTT 325 ||| | || ||| |||| || |||||||||| |||||| ||||| | |||||| | || Sbjct 442010 GCCTGTGGGTCCCATGAAGACAATGAGCAGTCCTGCAGCCAAGAACGTGACGTGTT--TT 442067 Query 326 ACCA--TTGGGGCCCCCG----CAAAAGGCAATCGGAGTGACCTTGCCGGAGCTGTTGCC 379 ||| | |||| | | | | | |||| |||| | ||| | |||||| ||||| Sbjct 442068 GCCAGGTAGGGGTCTCTGTGGGCTGAGGGCAC-CGGACTCGCCTCACGGGAGCTTTTGCC 442126 Query 380 GCCGTGAAAGCCGGAAGACCAATGACGGAAGTCGCGCGAGAGTTCAGTGAAGCCTACGTC 439 ||| |||| ||||||| |||| ||||| |||||| ||||||| ||| ||||| ||| Sbjct 442127 GCCATGAAGGCCGGAACTAAAATGGCGGAAATCGCGCAAGAGTTCCCTGAGGCCTATGTC 442186 Query 440 AAGTGGGGGCGTGGCCTGAAGGATCTGGCACTGATGATTGGCCAGAAGCCCCGTGACTTC 499 ||||||| || |||||| | |||||| ||| ||||||||||| | ||| | || Sbjct 442187 AAGTGGGCGCCTGGCCTCAGAGATCTGAGACTCCTGATTGGCCAGCA--ACCGCAATTTT 442244 Query 500 AAGACGGAGGTGATTGTGTTGACCGGCCC-CTCGGGGGTGGGGAAGAGCCGCTGGGC-CA 557 | || || | ||| ||| ||||| | ||| | | | |||||||| ||||| Sbjct 442245 GAAACTGAAGCCGACGTGCTGATTGGCCCACCAGGGTGAGAGCAAGAGCCGTTGGGCTGC 442304 Query 558 ATGAACAGGAAGGTACGAAATACTACAAG-----------ATGAAGGGTGATTGGTGGGA 606 | ||| || || | | | ||||| ||| ||| | ||| |||| Sbjct 442305 CTCCCAAGGGAGTCAC--ACTCCCACAAGGCCCAAGGAGAATGGTGGGAAAATGGCGGGA 442362 Query 607 CGGATAT------TCAAACGAAGACATCGTGGTGATTGACGACTTCTATGGGTGGATCCC 660 || || | || |||||| | || || || ||||||||||| ||| |||| Sbjct 442363 TGGCCATGAAGGGGAAGACAAAGACAGAGCAGTCATGGATGACTTCTATGGCTGGCTCCC 442422 Query 661 GTTCTGTGAGCTGCTCCGCCTTTGTGATCGTTATCCCCACAAAGTGCCAGTCAAAGG--- 717 ||||||||||||||||| || ||| | ||||| || || || || || || || Sbjct 442423 ATTCTGTGAGCTGCTCCGGCTGACTGACTGCTATCCACATAAGGTCCCCGTGAATGGAAT 442482 Query 718 ---CAGCTACGTGGAGTTTACGTCAAAGAAGATCATCATCACGAGCAACA 764 || | ||||| || || |||||||||||||| || ||||||| Sbjct 442483 TCCCACTTCTGTGGAATTCACAAGCAAGAAGATCATCATGACCAGCAACA 442532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6233201415824