Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_030199.1 Length=1939 Score E Sequences producing significant alignments: (Bits) Value seq152 122 1e-24 >seq152 Length=1326514 Score = 122 bits (134), Expect = 1e-24 Identities = 294/441 (67%), Gaps = 38/441 (9%) Strand=Plus/Plus Query 358 AGGGCAACCGGAGCGACCTGTCGGGAGCTGTTGCCGCCGTGAAAGCCGGAAGAGCAATGA 417 |||||| ||||| ||| |||||||| |||||||| |||| ||||||| |||| Sbjct 442093 AGGGCA-CCGGACTCGCCTCACGGGAGCTTTTGCCGCCATGAAGGCCGGAACTAAAATGG 442151 Query 418 GCGAGATCGCGCGAGAGTTCAGTGAAGTTTACGTCAAGTATGGGCGTGGCCTAAGAGATC 477 || ||||||| ||||||| ||| | || ||||||| | || |||||| ||||||| Sbjct 442152 CGGAAATCGCGCAAGAGTTCCCTGAGGCCTATGTCAAGTGGGCGCCTGGCCTCAGAGATC 442211 Query 478 TGGCTCTCCTGATTGGTCAGAAACCACGTGACTTCAAGACTGA---CGTCATACTGATAA 534 || ||||||||||| ||| ||| || | || | ||||| || | | ||||| Sbjct 442212 TGAGACTCCTGATTGGCCAGCAAC--CGCAATTTTGAAACTGAAGCCGACGTGCTGAT-- 442267 Query 535 CTGGCCC-CTCGGGGGTGGGGAAAAGCCGTTGGGCATTTGAATATCCCGGAAG------- 586 |||||| | ||| | | | || ||||||||||| || | | || || Sbjct 442268 -TGGCCCACCAGGGTGAGAGCAAGAGCCGTTGGGC---TGCCTCCCAAGGGAGTCACACT 442323 Query 587 ----CAAGTTCTA--TAAAATGAAGGGGGAGTGGTGGGACGGATATGCAAATGAGGATGT 640 |||| | | | |||| ||| | ||| |||| || ||| | || || Sbjct 442324 CCCACAAGGCCCAAGGAGAATGGTGGGAAAATGGCGGGATGGCCATGAAGGGGAAGACAA 442383 Query 641 TGTC------GTCATTGATGACTTTTATGGCTGGCTGCCATTTTGTGAGCTGTTGAGACT 694 | | ||||| |||||||| ||||||||||| ||||| ||||||||| | | || Sbjct 442384 AGACAGAGCAGTCATGGATGACTTCTATGGCTGGCTCCCATTCTGTGAGCTGCTCCGGCT 442443 Query 695 GACTGATCGTTACCCACACAAAGTGCCCGTGAAAGG------CTCATATGTGGAGTTCAA 748 |||||| | || ||||| || || |||||||| || | | | |||||| |||| Sbjct 442444 GACTGACTGCTATCCACATAAGGTCCCCGTGAATGGAATTCCCACTTCTGTGGAATTCAC 442503 Query 749 CTCAAAGACGATCATTATCAC 769 |||| |||||| || || Sbjct 442504 AAGCAAGAAGATCATCATGAC 442524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6095610214140