Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq78526 113 2e-21 seq373 105 2e-19 seq158 96.9 1e-16 seq1495 93.3 1e-15 seq446 89.7 2e-14 >seq78526 Length=7101863 Score = 113 bits (124), Expect = 2e-21 Identities = 65/67 (97%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2450 TTCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACAT 2509 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 3440070 TTCTCCCTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTGCAT 3440011 Query 2510 CGTCAAC 2516 ||||||| Sbjct 3440010 CGTCAAC 3440004 >seq373 Length=602208 Score = 105 bits (116), Expect = 2e-19 Identities = 63/66 (95%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 2447 TGGTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTA 2506 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 105421 TGGTTCTCACTTCGGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGGTG 105362 Query 2507 CATCGT 2512 |||||| Sbjct 105361 CATCGT 105356 >seq158 Length=2496286 Score = 96.9 bits (106), Expect = 1e-16 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 5019 TACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGG 5078 || ||||| ||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 677923 TAAGTTAAAAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAACAACAG 677864 Query 5079 AACAAC 5084 |||||| Sbjct 677863 AACAAC 677858 >seq1495 Length=46433 Score = 93.3 bits (102), Expect = 1e-15 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 5286 AAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTT 5345 ||| | ||| ||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 29380 AAACTCACTAAAGCCGACTTGTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTT 29321 Query 5346 ATGCGC 5351 |||||| Sbjct 29320 ATGCGC 29315 >seq446 Length=347275 Score = 89.7 bits (98), Expect = 2e-14 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 880 CCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTG 939 ||||||| ||| |||| |||||||||||||||||||||||||||||| |||||| |||| Sbjct 20054 CCCTGGTTGTCAGCAGGCGTTGCGAGGTACTAAAGGCAAGCGTAAAGACGCTCGCCTTTA 20113 Query 940 GTAT 943 |||| Sbjct 20114 GTAT 20117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17108480335425