Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_020904.1 Length=2063 Score E Sequences producing significant alignments: (Bits) Value seq8418 116 5e-23 seq15089 98.7 1e-17 >seq8418 Length=44511 Score = 116 bits (128), Expect = 5e-23 Identities = 122/159 (77%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 586 TATTGGAAGCCCAGAGGAAAATGGTGGGATGGCTACGATGGGCACCAGGATGTCATTCTG 645 |||||||| ||| | ||||| |||||||| || || ||||| || ||| || || Sbjct 36114 TATTGGAAACCCCGTGGAAAGTGGTGGGACGGGTATACAGGGCAAGAGATTGTTATATTG 36173 Query 646 GATGACTTCTATGGATGGCTGCCCTTTGATGACATGTTGAGACTCTGTGATCGGTACCCT 705 ||||| || ||||| ||||| || |||||||| |||| ||| | |||||| | |||||| Sbjct 36174 GATGATTTTTATGGGTGGCTACCATTTGATGAATTGTTAAGAATTTGTGATAGATACCCT 36233 Query 706 CTCAGAGTTGAGACCAAAGGTGGTACCAT-GAATTTCTT 743 |||||||||||||| | |||||| || |||||| || Sbjct 36234 TATAGAGTTGAGACCAAGGATGGTACAATGGAATTTGTT 36272 >seq15089 Length=55194 Score = 98.7 bits (108), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 586 TATTGGAAGCCCAGAGGAAAATGGTGGGATGGCTACGATGGGCACCAGGATGTCATTCTG 645 || ||||| || | ||||| ||||||||||| ||| ||| || || ||| || || Sbjct 21799 TACTGGAAACCACGGGGAAAGTGGTGGGATGGATACACTGGACAAGAGATTGTGATATTG 21740 Query 646 GATGACTTCTATGGATGGCTGCCCTTTGATGACATGTTGAGACTCTGTGATCGGTACCCT 705 ||||| | ||||| ||||| ||||||||||| |||| ||| | |||||| | || || Sbjct 21739 GATGATTATTATGGTTGGCTCCCCTTTGATGAATTGTTAAGATTGTGTGATAGATATCCC 21680 Query 706 CTCAGAGTTGAGACCAAAGGTGGTACCA-TGAATTTCTTGGCACGTCGGATCTTTATTAC 764 |||||| ||||| ||||| || || | ||| ||| | || | | || | ||| || Sbjct 21679 TACAGAGTGGAGACTAAAGGGGGAACTATTGAGTTTGTGTCCAAGAC-CATTTATATCAC 21621 Query 765 TTCTAATAGATTGCCTCATGAATGGTATAGTGATGA 800 ||| || | | | | |||||||||| ||| || Sbjct 21620 TTCAAACAAACCTGTTAAGGAATGGTATAATGAGGA 21585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6479963912952