Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_021206.1 Length=1798 Score E Sequences producing significant alignments: (Bits) Value seq15089 134 2e-28 seq8418 96.9 4e-17 >seq15089 Length=55194 Score = 134 bits (148), Expect = 2e-28 Identities = 122/154 (79%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 629 AAATGGTGGGATGGATATTGTGGACAAGAAGTAGTAATATTGGATGACTTTTATGGCTGG 688 || |||||||||||||| ||||||||| | || ||||||||||| | |||||| ||| Sbjct 21781 AAGTGGTGGGATGGATACACTGGACAAGAGATTGTGATATTGGATGATTATTATGGTTGG 21722 Query 689 CTTCCATATGATGAAATGTTAAGACTGTGTGATAGGTATCCACTTACAGTGGAAACTAAA 748 || || | ||||||| |||||||| |||||||||| ||||| | |||||| |||||| Sbjct 21721 CTCCCCTTTGATGAATTGTTAAGATTGTGTGATAGATATCCCTACAGAGTGGAGACTAAA 21662 Query 749 GGTGGAACTGTTCCTTTTTTGGCCAGGACTATTT 782 || |||||| || ||| || ||| ||| |||| Sbjct 21661 GGGGGAACTATTGAGTTTGTGTCCAAGACCATTT 21628 >seq8418 Length=44511 Score = 96.9 bits (106), Expect = 4e-17 Identities = 158/224 (71%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 533 GTACACGTCATCATAGGCCCGCCTGGGTGTGGCAAAAGTAAATGGGCCTGTAATTTTGCA 592 ||||| || |||| ||| || ||||||||||| ||||| | ||||| | | | Sbjct 36045 GTACATGTGATCACAGGAATTCCGGGGTGTGGCAAGAGTAAGTT---CTGTAGT---GAA 36098 Query 593 GAGCCTGAAGTAACATTTTGGAAGGCTCCCAGGAATAAATGGTGGGATGGATATTGTGGA 652 | || | | || |||||| | || |||| | |||||||| || ||| || Sbjct 36099 CTGGATGGTGACAAATATTGGAAACC-CCGTGGAA--AGTGGTGGGACGGGTATACAGGG 36155 Query 653 CAAGAAGTAGTAATATTGGATGACTTTTATGGCTGGCTTCCATATGATGAAATGTTAAGA 712 ||||| | || ||||||||||| |||||||| ||||| |||| ||||||| |||||||| Sbjct 36156 CAAGAGATTGTTATATTGGATGATTTTTATGGGTGGCTACCATTTGATGAATTGTTAAGA 36215 Query 713 CTGTGTGATAGGTATCCACTTACAGTGGAAACTAAAGGTGGAAC 756 | |||||||| || || || ||| || || || | ||| || Sbjct 36216 ATTTGTGATAGATACCCTTATAGAGTTGAGACCAAGGATGGTAC 36259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5633640385632