Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21]
186,068 sequences; 1,520,334,138 total letters
Query= NC_023885.1
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
seq8418 223 4e-55
seq15089 127 2e-26
>seq8418
Length=44511
Score = 223 bits (246), Expect = 4e-55
Identities = 532/782 (68%), Gaps = 38/782 (5%)
Strand=Plus/Plus
Query 43 TGGCCGGCCACCCCTGCAAAAGGTACTGT-TTTACTATTAACAATTACCTACCT-GAGGA 100
|||| || || ||||||||||| || ||| ||||||||||||||| ||| | || ||
Sbjct 35575 TGGCTGGACATCCCTGCAAAAGATA-TGTATTTACTATTAACAATC-CCTCCGAAGAAGA 35632
Query 101 TGAAGCCGCAGTGAAGGAGTTCCTGACGGAGGCTAACTGTGTGTATGC---AGTTGTTGG 157
| | | || || ||||| || | || || ||||| || ||||| ||||| ||
Sbjct 35633 TTATGATGCTGTTAAGGACTTTATCACTCCGGAAAACTGCGTTTATGCTATAGTTGGTGA 35692
Query 158 AAAGGAGGTCGGAGAATCAGGAACTCCGCACTTGCAAGGATTCTGT-AATCTGAAGAAGA 216
| | | ||| ||| || | |||||||||||||| ||| || || |||||||
Sbjct 35693 AGAACAAGTC------TCA---ACCCTCCACTTGCAAGGATT-TGTCAACCTAAAGAAGA 35742
Query 217 AAATGCGGTTTGAGCCGTTTAAGCGGGCTATAGGTGGCCGTGCGCATATAGAGCAGAGCC 276
| ||| | || | || || || ||||| ||||| | || ||| | ||| | |||
Sbjct 35743 AGATGAGATTCAATCCCTTCAAAGCAGCTATTGGTGGAAGAGCTCATGTGGAGAA-AGCT 35801
Query 277 GAG-GTACTGATGTGGATAACAAAAGATATTGCAGTAAAGGGGGAGACTTACTGCTGGAA 335
| | |||||| |||||||||| |||||||||||||| | || |||| || ||
Sbjct 35802 AAACGAACTGATCTGGATAACAAGAGATATTGCAGTAAGCAGAAAGT-TTAC--CTTGAG 35858
Query 336 GTTGGAGAGCCGAGCGCGCAGGGAAAGCGGAGCGATTTGAAGGAGGCTGTGACCTTGCTG 395
||||||||||| ||| || |||||| || || ||||||| ||| | | |||||
Sbjct 35859 GTTGGAGAGCCCTCCGCACAAGGAAAGAGGTTAGACCTGAAGGAAGCTATTGCTCTGCTG 35918
Query 396 AATAATGGCGGAACAATGACTGATGTTGCCCGGGCCCATCCCGAGACTTTTATACGTTAT 455
|| | || |||||||||| |||||| ||| ||||| | |||| | |||
Sbjct 35919 AACAGCGGTTCCTCAATGACTGAACTTGCCCAGGCATATCCCTCCGTATATATAAGATAT 35978
Query 456 GGGAGGGGCCTGAGGGATTACGTCATACAGGCGGGGCTAACAAAGCCGAGGGCGTGGAAG 515
||||||||||||| || |||||||| || | || | | ||| | | ||
Sbjct 35979 GGGAGGGGCCTGAAAGACTACGTCATCACTGCACAATTGACTAGGATGAGAGATTTCAAA 36038
Query 516 ACCGAAGTTCATGTGATTGTGGGGCCACCTGGCGTG-GGCAAG-TCCAGGCATGTACAAG 573
|| || || |||||||| || || || ||| |||||| || |||| |
Sbjct 36039 ACTGATGTACATGTGATCACAGGAATTCC-GGGGTGTGGCAAGAGTAAGTTCTGTA-GTG 36096
Query 574 AAACAGCTGGTGAGAACGCCCTGTACTGGAAGCCCCGTGGAAAATGGTGGGATGGCTACA 633
|| | |||||| || || ||||| ||||||||||| |||||||| || || |
Sbjct 36097 AACTGGATGGTGACAA------ATATTGGAAACCCCGTGGAAAGTGGTGGGACGGGTATA 36150
Query 634 C-TGGCCAGAGCCATGTGGTGTTGGATGATTTTTACGGGTGGCTTCCGTATGATGACCTG 692
| ||| |||| ||| | |||||||||||||| |||||||| || | |||||| ||
Sbjct 36151 CAGGGCAAGAG-ATTGTTATATTGGATGATTTTTATGGGTGGCTACCATTTGATGAATTG 36209
Query 693 TTGCGGCTTTGTGATAGGTACCCCCTTAGAGTCGAAACTAAAGGGGGTACCGTTGAATTT 752
|| | |||||||||| ||||| |||||| || || || | ||||| | ||||||
Sbjct 36210 TTAAGAATTTGTGATAGATACCCTTATAGAGTTGAGACCAAGGATGGTACAATGGAATTT 36269
Query 753 GTTGCAAAGGTTATTTGGATAACCAGCAATAAGCAAGTTAAGGACTGGTATGACTATGAA 812
||| | ||| ||||| || || || |||| || || || ||||||| |||||
Sbjct 36270 GTTTCTAAGTGTATTTATATCACTTCAAACAAGCCTGTGAAAGAGTGGTATG---ATGAA 36326
Query 813 GA 814
||
Sbjct 36327 GA 36328
>seq15089
Length=55194
Score = 127 bits (140), Expect = 2e-26
Identities = 155/209 (74%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 596 GTACTGGAAGCCCCGTGGAAAATGGTGGGATGGCTACACTGGCCAGAGCCAT-GTGGTGT 654
||||||||| || || ||||| ||||||||||| |||||||| || || || ||| | |
Sbjct 21800 GTACTGGAAACCACGGGGAAAGTGGTGGGATGGATACACTGGACA-AGAGATTGTGATAT 21742
Query 655 TGGATGATTTTTACGGGTGGCTTCCGTATGATGACCTGTTGCGGCTTTGTGATAGGTACC 714
||||||||| ||| || ||||| || | |||||| |||| | | |||||||| || |
Sbjct 21741 TGGATGATTATTATGGTTGGCTCCCCTTTGATGAATTGTTAAGATTGTGTGATAGATATC 21682
Query 715 CCCTTAGAGTCGAAACTAAAGGGGGTACCGTTGAATTTGTTGCAAAGGTTATTTGGATAA 774
|| ||||| || ||||||||||| || |||| ||||| | ||| |||| || |
Sbjct 21681 CCTACAGAGTGGAGACTAAAGGGGGAACTATTGAGTTTGTGTCCAAGACCATTTATATCA 21622
Query 775 CCAGCAATAAGCAAGTTAAGGACTGGTAT 803
| || || | |||||||| ||||||
Sbjct 21621 CTTCAAACAAACCTGTTAAGGAATGGTAT 21593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5489925069672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |