Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_023885.1 Length=1753 Score E Sequences producing significant alignments: (Bits) Value seq8418 223 4e-55 seq15089 127 2e-26 >seq8418 Length=44511 Score = 223 bits (246), Expect = 4e-55 Identities = 532/782 (68%), Gaps = 38/782 (5%) Strand=Plus/Plus Query 43 TGGCCGGCCACCCCTGCAAAAGGTACTGT-TTTACTATTAACAATTACCTACCT-GAGGA 100 |||| || || ||||||||||| || ||| ||||||||||||||| ||| | || || Sbjct 35575 TGGCTGGACATCCCTGCAAAAGATA-TGTATTTACTATTAACAATC-CCTCCGAAGAAGA 35632 Query 101 TGAAGCCGCAGTGAAGGAGTTCCTGACGGAGGCTAACTGTGTGTATGC---AGTTGTTGG 157 | | | || || ||||| || | || || ||||| || ||||| ||||| || Sbjct 35633 TTATGATGCTGTTAAGGACTTTATCACTCCGGAAAACTGCGTTTATGCTATAGTTGGTGA 35692 Query 158 AAAGGAGGTCGGAGAATCAGGAACTCCGCACTTGCAAGGATTCTGT-AATCTGAAGAAGA 216 | | | ||| ||| || | |||||||||||||| ||| || || ||||||| Sbjct 35693 AGAACAAGTC------TCA---ACCCTCCACTTGCAAGGATT-TGTCAACCTAAAGAAGA 35742 Query 217 AAATGCGGTTTGAGCCGTTTAAGCGGGCTATAGGTGGCCGTGCGCATATAGAGCAGAGCC 276 | ||| | || | || || || ||||| ||||| | || ||| | ||| | ||| Sbjct 35743 AGATGAGATTCAATCCCTTCAAAGCAGCTATTGGTGGAAGAGCTCATGTGGAGAA-AGCT 35801 Query 277 GAG-GTACTGATGTGGATAACAAAAGATATTGCAGTAAAGGGGGAGACTTACTGCTGGAA 335 | | |||||| |||||||||| |||||||||||||| | || |||| || || Sbjct 35802 AAACGAACTGATCTGGATAACAAGAGATATTGCAGTAAGCAGAAAGT-TTAC--CTTGAG 35858 Query 336 GTTGGAGAGCCGAGCGCGCAGGGAAAGCGGAGCGATTTGAAGGAGGCTGTGACCTTGCTG 395 ||||||||||| ||| || |||||| || || ||||||| ||| | | ||||| Sbjct 35859 GTTGGAGAGCCCTCCGCACAAGGAAAGAGGTTAGACCTGAAGGAAGCTATTGCTCTGCTG 35918 Query 396 AATAATGGCGGAACAATGACTGATGTTGCCCGGGCCCATCCCGAGACTTTTATACGTTAT 455 || | || |||||||||| |||||| ||| ||||| | |||| | ||| Sbjct 35919 AACAGCGGTTCCTCAATGACTGAACTTGCCCAGGCATATCCCTCCGTATATATAAGATAT 35978 Query 456 GGGAGGGGCCTGAGGGATTACGTCATACAGGCGGGGCTAACAAAGCCGAGGGCGTGGAAG 515 ||||||||||||| || |||||||| || | || | | ||| | | || Sbjct 35979 GGGAGGGGCCTGAAAGACTACGTCATCACTGCACAATTGACTAGGATGAGAGATTTCAAA 36038 Query 516 ACCGAAGTTCATGTGATTGTGGGGCCACCTGGCGTG-GGCAAG-TCCAGGCATGTACAAG 573 || || || |||||||| || || || ||| |||||| || |||| | Sbjct 36039 ACTGATGTACATGTGATCACAGGAATTCC-GGGGTGTGGCAAGAGTAAGTTCTGTA-GTG 36096 Query 574 AAACAGCTGGTGAGAACGCCCTGTACTGGAAGCCCCGTGGAAAATGGTGGGATGGCTACA 633 || | |||||| || || ||||| ||||||||||| |||||||| || || | Sbjct 36097 AACTGGATGGTGACAA------ATATTGGAAACCCCGTGGAAAGTGGTGGGACGGGTATA 36150 Query 634 C-TGGCCAGAGCCATGTGGTGTTGGATGATTTTTACGGGTGGCTTCCGTATGATGACCTG 692 | ||| |||| ||| | |||||||||||||| |||||||| || | |||||| || Sbjct 36151 CAGGGCAAGAG-ATTGTTATATTGGATGATTTTTATGGGTGGCTACCATTTGATGAATTG 36209 Query 693 TTGCGGCTTTGTGATAGGTACCCCCTTAGAGTCGAAACTAAAGGGGGTACCGTTGAATTT 752 || | |||||||||| ||||| |||||| || || || | ||||| | |||||| Sbjct 36210 TTAAGAATTTGTGATAGATACCCTTATAGAGTTGAGACCAAGGATGGTACAATGGAATTT 36269 Query 753 GTTGCAAAGGTTATTTGGATAACCAGCAATAAGCAAGTTAAGGACTGGTATGACTATGAA 812 ||| | ||| ||||| || || || |||| || || || ||||||| ||||| Sbjct 36270 GTTTCTAAGTGTATTTATATCACTTCAAACAAGCCTGTGAAAGAGTGGTATG---ATGAA 36326 Query 813 GA 814 || Sbjct 36327 GA 36328 >seq15089 Length=55194 Score = 127 bits (140), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 596 GTACTGGAAGCCCCGTGGAAAATGGTGGGATGGCTACACTGGCCAGAGCCAT-GTGGTGT 654 ||||||||| || || ||||| ||||||||||| |||||||| || || || ||| | | Sbjct 21800 GTACTGGAAACCACGGGGAAAGTGGTGGGATGGATACACTGGACA-AGAGATTGTGATAT 21742 Query 655 TGGATGATTTTTACGGGTGGCTTCCGTATGATGACCTGTTGCGGCTTTGTGATAGGTACC 714 ||||||||| ||| || ||||| || | |||||| |||| | | |||||||| || | Sbjct 21741 TGGATGATTATTATGGTTGGCTCCCCTTTGATGAATTGTTAAGATTGTGTGATAGATATC 21682 Query 715 CCCTTAGAGTCGAAACTAAAGGGGGTACCGTTGAATTTGTTGCAAAGGTTATTTGGATAA 774 || ||||| || ||||||||||| || |||| ||||| | ||| |||| || | Sbjct 21681 CCTACAGAGTGGAGACTAAAGGGGGAACTATTGAGTTTGTGTCCAAGACCATTTATATCA 21622 Query 775 CCAGCAATAAGCAAGTTAAGGACTGGTAT 803 | || || | |||||||| |||||| Sbjct 21621 CTTCAAACAAACCTGTTAAGGAATGGTAT 21593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5489925069672