Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_028045.1 Length=1767 Score E Sequences producing significant alignments: (Bits) Value seq15089 95.1 1e-16 seq8418 77.0 4e-11 >seq15089 Length=55194 Score = 95.1 bits (104), Expect = 1e-16 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 584 AAGTACTGGAAGCCACGCGGGCAGTGGTGGGATGGGTATAATGGAGAGGATATTGTTGTA 643 ||||||||||| ||||| || ||||||||||||| || | |||| | || ||||| || Sbjct 21802 AAGTACTGGAAACCACGGGGAAAGTGGTGGGATGGATACACTGGACAAGAGATTGTGATA 21743 Query 644 TTAGATGATTTTTATGGATGGGTCCCCTATGATGA 678 || ||||||| |||||| ||| |||||| |||||| Sbjct 21742 TTGGATGATTATTATGGTTGGCTCCCCTTTGATGA 21708 >seq8418 Length=44511 Score = 77.0 bits (84), Expect = 4e-11 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 584 AAGTACTGGAAGCCACGCGGGCAGTGGTGGGATGGGTATAATGGAGAGGATATTGTTGTA 643 || || ||||| || || || |||||||||| ||||||| || | || |||||| || Sbjct 36111 AAATATTGGAAACCCCGTGGAAAGTGGTGGGACGGGTATACAGGGCAAGAGATTGTTATA 36170 Query 644 TTAGATGATTTTTATGGATGGGTCCCCTATGATGA 678 || |||||||||||||| ||| | || | |||||| Sbjct 36171 TTGGATGATTTTTATGGGTGGCTACCATTTGATGA 36205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5534636501304