Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_020904.1 Length=2063 Score E Sequences producing significant alignments: (Bits) Value seq9165 116 5e-23 SEQ24207 113 6e-22 seq192303 96.9 4e-17 >seq9165 Length=10910 Score = 116 bits (128), Expect = 5e-23 Identities = 122/159 (77%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 586 TATTGGAAGCCCAGAGGAAAATGGTGGGATGGCTACGATGGGCACCAGGATGTCATTCTG 645 |||||||| ||| | ||||| |||||||| || || ||||| || ||| || || Sbjct 2698 TATTGGAAACCCCGTGGAAAGTGGTGGGACGGGTATACAGGGCAAGAGATTGTTATATTG 2757 Query 646 GATGACTTCTATGGATGGCTGCCCTTTGATGACATGTTGAGACTCTGTGATCGGTACCCT 705 ||||| || ||||| ||||| || |||||| | |||| ||| | |||||| | |||||| Sbjct 2758 GATGATTTTTATGGGTGGCTACCATTTGATAAATTGTTAAGAATTTGTGATAGATACCCT 2817 Query 706 CTCAGAGTTGAGACCAAAGGTGGTACCAT-GAATTTCTT 743 |||||||||||||| |||||||| || |||||| || Sbjct 2818 TATAGAGTTGAGACCAAGGGTGGTACAATGGAATTTGTT 2856 >SEQ24207 Length=10468 Score = 113 bits (124), Expect = 6e-22 Identities = 121/159 (76%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 586 TATTGGAAGCCCAGAGGAAAATGGTGGGATGGCTACGATGGGCACCAGGATGTCATTCTG 645 || ||||| ||| ||||| ||||||||||| || ||| || || ||| || || Sbjct 6720 TACTGGAAACCCCATGGAAAGTGGTGGGATGGGTATACTGGACAAGAGATTGTTATATTG 6779 Query 646 GATGACTTCTATGGATGGCTGCCCTTTGATGACATGTTGAGACTCTGTGATCGGTACCCT 705 ||||| || ||||||||| | || |||||||| |||| ||| | |||||| | ||| || Sbjct 6780 GATGATTTTTATGGATGGATACCATTTGATGAATTGTTAAGAATTTGTGATAGATACTCT 6839 Query 706 CTCAGAGTTGAGACCAAAGGTGGTACCAT-GAATTTCTT 743 |||||||||||| || |||||||| || |||||| || Sbjct 6840 TACAGAGTTGAGACGAAGGGTGGTACAATGGAATTTGTT 6878 >seq192303 Length=6807 Score = 96.9 bits (106), Expect = 4e-17 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 586 TATTGGAAGCCCAGAGGAAAATGGTGGGATGGCTACGATGGGCACCAGGATGTCATTCTG 645 || ||||| || | ||||| ||||||||||| ||| ||| || || ||| || || Sbjct 163 TACTGGAAACCGCGGGGAAAGTGGTGGGATGGATACACTGGACAAGAGATTGTGATATTG 222 Query 646 GATGACTTCTATGGATGGCTGCCCTTTGATGACATGTTGAGACTCTGTGATCGGTACCCT 705 ||||| | ||||| ||||| ||||||||||| |||| ||| | |||||| | || || Sbjct 223 GATGATTATTATGGTTGGCTCCCCTTTGATGAATTGTTAAGATTGTGTGATAGATATCCC 282 Query 706 CTCAGAGTTGAGACCAAAGGTGGTAC 731 |||||| ||||| ||||| || || Sbjct 283 TACAGAGTGGAGACTAAAGGGGGAAC 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6460143407320