Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_023885.1 Length=1753 Score E Sequences producing significant alignments: (Bits) Value seq9165 221 1e-54 seq192303 131 2e-27 SEQ24207 114 1e-22 seq327854 77.0 4e-11 >seq9165 Length=10910 Score = 221 bits (244), Expect = 1e-54 Identities = 534/784 (68%), Gaps = 41/784 (5%) Strand=Plus/Plus Query 43 TGGCCGGCCACCCCTGCAAAAGGTACTGT-TTTACTATTAACAATTACCTACCT-GAGGA 100 |||| || || ||||||||||| || ||| ||||||||||||||| ||| | || || Sbjct 2159 TGGCTGGACATCCCTGCAAAAGATA-TGTATTTACTATTAACAATC-CCTCCGAAGAAGA 2216 Query 101 TGAAGCCGCAGTGAAGGAGTTCCTGACGGAGGCTAACTGTGTGTATGC---AGTTGTTGG 157 | | | || || ||||| || | || || ||||| || ||||| ||||| || Sbjct 2217 TTATGATGCTGTTAAGGACTTTATCACTCCGGAAAACTGCGTTTATGCTATAGTTGGTGA 2276 Query 158 AAAGGAGGTCGGAGAATCAGGAACTCCGCACTTGCAAGGATTCTGT-AATCTGAAGAAGA 216 | | | ||| ||| || | |||||||||||||| ||| || || ||||||| Sbjct 2277 AGAACAAGTC------TCA---ACCCTCCACTTGCAAGGATT-TGTCAACCTAAAGAAGA 2326 Query 217 AAATGCGGTTTGAGCCGTTTAAGCGGGCTATAGGTGGCCGTGCGCATATAGAGCAGAGCC 276 | ||| | || | || || || ||||| ||||| | || ||| | ||| | ||| Sbjct 2327 AGATGAGATTCAATCCCTTCAAAGCAGCTATTGGTGGAAGAGCTCATGTGGAGAA-AGCT 2385 Query 277 GA-GGTACTGATGTGGATAACAAAAGATATTGCAGTAAAGGGGGAGACTTACTGCTGGAA 335 | || |||||| |||||||||| |||||||||||||| | || |||| || || Sbjct 2386 AAAGGAACTGATCTGGATAACAAGAGATATTGCAGTAAGCAGAAAGT-TTAC--CTTGAG 2442 Query 336 GTTGGAGAGCCGAGCGCGCAGGGAAAGCGGAGCGATTTGAAGGAGGCTGTGACCTTGCTG 395 |||| |||||| ||| || |||||| || ||| ||||||| ||| | | ||||| Sbjct 2443 GTTGCAGAGCCCTCCGCACAAGGAAAGAGGTTAGATCTGAAGGAAGCTATTGCTCTGCTG 2502 Query 396 AATAATGGCGGAACAATGACTGATGTTGCCCGGGCCCATCCCGAGACTTTTATACGTTAT 455 || | || |||||||||| |||||| ||| ||||| | |||| | ||| Sbjct 2503 AACAGCGGTTCCTCAATGACTGAACTTGCCCAGGCATATCCCTCCGTATATATAAGATAT 2562 Query 456 GGGAGGGGCCTGAGGGATTACGTCATACAGGCGGGGCTAACAAAGCCGAGGGCGTGGAAG 515 ||||||||||||| || |||||||| || | | | | ||| | | || Sbjct 2563 GGGAGGGGCCTGAAAGACTACGTCATCACTGCACAATTGGCTAGGATGAGAGATTTCAAA 2622 Query 516 ACCGAAGTTCATGTGATTGTGGGGCCACCTGGCGTG-GGCAAGTCCAGGCATGTACA-AG 573 || || || |||||||| || || || ||| |||||| | | | || | | Sbjct 2623 ACTGATGTACATGTGATCACAGGAATTCC-GGGGTGTGGCAAGAGTAAG-TTCTATAGTG 2680 Query 574 AAACAGCTGGTGAGAACGCCCTGTACTGGAAGCCCCGTGGAAAATGGTGGGATGGCTACA 633 || | |||||| || || ||||| ||||||||||| |||||||| || || | Sbjct 2681 AACTGGATGGTGACAA------ATATTGGAAACCCCGTGGAAAGTGGTGGGACGGGTATA 2734 Query 634 C-TGGCCAGAGCCATGTGGTGTTGGATGATTTTTACGGGTGGCTTCCGTATGATGACCTG 692 | ||| |||| ||| | |||||||||||||| |||||||| || | |||| | || Sbjct 2735 CAGGGCAAGAG-ATTGTTATATTGGATGATTTTTATGGGTGGCTACCATTTGATAAATTG 2793 Query 693 TTGCGGCTTTGTGATAGGTACCCCCTTAGAGTCGAAACTAAAGGGGGTACCGTTGAATTT 752 || | |||||||||| ||||| |||||| || || || || ||||| | |||||| Sbjct 2794 TTAAGAATTTGTGATAGATACCCTTATAGAGTTGAGACCAAGGGTGGTACAATGGAATTT 2853 Query 753 GTTGCAAAGGTTATTTGGATAAC--CAGCAATAAGCAAGTTAAGGACTGGTATGACTATG 810 ||| | ||| ||||| || || || || |||| || || || ||||||| ||| Sbjct 2854 GTTTCTAAGTGTATTTATATCACTTCA-AAACAAGCCTGTGAAAGAGTGGTATG---ATG 2909 Query 811 AAGA 814 |||| Sbjct 2910 AAGA 2913 >seq192303 Length=6807 Score = 131 bits (144), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 596 GTACTGGAAGCCCCGTGGAAAATGGTGGGATGGCTACACTGG-CCAGAGCCATGTGGTGT 654 ||||||||| || || ||||| ||||||||||| |||||||| | |||| |||| | | Sbjct 162 GTACTGGAAACCGCGGGGAAAGTGGTGGGATGGATACACTGGACAAGAG-ATTGTGATAT 220 Query 655 TGGATGATTTTTACGGGTGGCTTCCGTATGATGACCTGTTGCGGCTTTGTGATAGGTACC 714 ||||||||| ||| || ||||| || | |||||| |||| | | |||||||| || | Sbjct 221 TGGATGATTATTATGGTTGGCTCCCCTTTGATGAATTGTTAAGATTGTGTGATAGATATC 280 Query 715 CCCTTAGAGTCGAAACTAAAGGGGGTACCGTTGAATTTGTTGCAAAGGTTATTTGGATAA 774 || ||||| || ||||||||||| || ||||| ||||| | ||| |||| || | Sbjct 281 CCTACAGAGTGGAGACTAAAGGGGGAACTGTTGAGTTTGTGTCTAAGACCATTTATATCA 340 Query 775 CCAGCAATAAGCAAGTTAAGGACTGGTAT 803 | || || | |||||||| |||||| Sbjct 341 CTTCAAACAAACCTGTTAAGGAATGGTAT 369 >SEQ24207 Length=10468 Score = 114 bits (126), Expect = 1e-22 Identities = 271/402 (67%), Gaps = 12/402 (3%) Strand=Plus/Plus Query 373 TGAAGGAGGCTGTGACCTTGCTGAATAATGGCGGAACAATGACTGATGTTGCCCGGGCCC 432 ||||||| ||| | | ||||||| | || |||||||||| |||||||||| Sbjct 6502 TGAAGGAAGCTATTGCTCTGCTGAACAGCGGTTCCTCAATGACTGAGCTTGCCCGGGCAT 6561 Query 433 ATCCCGAGACTTTTATACGTTATGGGAGGGGCCTGAGGGATTACGTCATACAGGCGGGGC 492 ||||| | |||| | ||||||| |||||||| || |||||||| || Sbjct 6562 ATCCCTCTGTATATATAAGATATGGGATGGGCCTGATAGACTACGTCATCACTGCACAAT 6621 Query 493 TAACAAAGCCGAGGGCGTGGAAGACCGAAGTTCATGTGATTGTGGGGCCACCTGGCGTG- 551 | | ||| ||| | | || || || || |||||||| || || || ||| Sbjct 6622 TGGCTAAGATGAGAGATTTCAAAACTGATGTACATGTGATCACAGGAATTCCGGG-GTGT 6680 Query 552 GGCAAGTCCAGGCAT-GTACAAGAAACAGCTGGTGAGAACGCCCTGTACTGGAAGCCCCG 610 |||||| | | | ||| ||| | |||||| || |||||||| |||| Sbjct 6681 GGCAAGAGTAAGTTTTGTAGT-GAACTGGATGGTGACAAA------TACTGGAAACCCCA 6733 Query 611 TGGAAAATGGTGGGATGGCTACACTGG-CCAGAGCCATGTGGTGTTGGATGATTTTTACG 669 |||||| ||||||||||| || ||||| | |||| ||| | |||||||||||||| | Sbjct 6734 TGGAAAGTGGTGGGATGGGTATACTGGACAAGAG-ATTGTTATATTGGATGATTTTTATG 6792 Query 670 GGTGGCTTCCGTATGATGACCTGTTGCGGCTTTGTGATAGGTACCCCCTTAGAGTCGAAA 729 | ||| | || | |||||| |||| | |||||||||| ||| | ||||| || | Sbjct 6793 GATGGATACCATTTGATGAATTGTTAAGAATTTGTGATAGATACTCTTACAGAGTTGAGA 6852 Query 730 CTAAAGGGGGTACCGTTGAATTTGTTGCAAAGGTTATTTGGA 771 | || || ||||| | ||||||||| | ||| ||||| || Sbjct 6853 CGAAGGGTGGTACAATGGAATTTGTTTCTAAGAGTATTTAGA 6894 >seq327854 Length=258 Score = 77.0 bits (84), Expect = 4e-11 Identities = 128/180 (71%), Gaps = 9/180 (5%) Strand=Plus/Plus Query 135 AACTGTGTGTATGCAGTTGTTGGAAAGGAGGTCGGAGAATCAGGAACTCCGCACTTGCAA 194 |||||||||||||| | |||||| | || || ||| || | ||||||||| Sbjct 60 AACTGTGTGTATGCTATAGTTGGAGAAGAACA---AGTTTCA---ACCCTCCACTTGCAA 113 Query 195 GGATTCTGTAATCTGAAGAAGAAAATGCGGTTTGAGCCGTTTAAGCGGGCTATAGGTGGC 254 | || | |||| | |||||||| ||| ||||| | || || || ||||| ||||| Sbjct 114 GCTTTGT-TAATTTAAAGAAGAAGATGAGGTTTAATCCCTTCAAAGCAGCTATTGGTGGA 172 Query 255 CGTGCGCATATAGAGCAGAGCCGA-GGTACTGATGTGGATAACAAAAGATATTGCAGTAA 313 | || || || || || ||| | || ||| || |||||||||| | |||||||||||| Sbjct 173 AGAGCTCACATTGAACA-AGCTAAAGGAACTAATTTGGATAACAAGACATATTGCAGTAA 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5473132832520