Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_025247.1 Length=1783 Score E Sequences producing significant alignments: (Bits) Value SEQ24207 89.7 6e-15 seq9165 89.7 6e-15 >SEQ24207 Length=10468 Score = 89.7 bits (98), Expect = 6e-15 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 603 AAGTACTATAAAGCGCGCGGAAAGTGGTGGGATGGGTATGAGGGTAATGACGTCGTCGTA 662 || |||| ||| | | ||||||||||||||||||||| || | || | || || Sbjct 6717 AAATACTGGAAACCCCATGGAAAGTGGTGGGATGGGTATACTGGACAAGAGATTGTTATA 6776 Query 663 ATGGACGACTTTTATGGGTGGTTACCGTACGATGATTTGTTGAGAATTTGTGACCGATAC 722 |||| || |||||||| ||| |||| | ||||| ||||| ||||||||||| ||||| Sbjct 6777 TTGGATGATTTTTATGGATGGATACCATTTGATGAATTGTTAAGAATTTGTGATAGATAC 6836 Query 723 CCAATCCGTGTTGAGTATAAGGGTGGGATGACGCAGTTCGTTGCCAAGA 771 | | | |||||| |||||||| | | | | || ||| | |||| Sbjct 6837 TCTTACAGAGTTGAGACGAAGGGTGGTACAATGGAATTTGTTTCTAAGA 6885 >seq9165 Length=10910 Score = 89.7 bits (98), Expect = 6e-15 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 612 AAAGCGCGCGGAAAGTGGTGGGATGGGTAT-GAGGGTAATGACGTCGTCGTAATGGACGA 670 ||| | || |||||||||||||| |||||| |||| || || | || || |||| || Sbjct 2704 AAACCCCGTGGAAAGTGGTGGGACGGGTATACAGGGCAA-GAGATTGTTATATTGGATGA 2762 Query 671 CTTTTATGGGTGGTTACCGTACGATGATTTGTTGAGAATTTGTGACCGATACCCAATCCG 730 |||||||||||| |||| | ||| | ||||| ||||||||||| ||||||| | Sbjct 2763 TTTTTATGGGTGGCTACCATTTGATAAATTGTTAAGAATTTGTGATAGATACCCTTATAG 2822 Query 731 TGTTGAGTATAAGGGTGG 748 |||||| |||||||| Sbjct 2823 AGTTGAGACCAAGGGTGG 2840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5568649984920