Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_028045.1 Length=1767 Score E Sequences producing significant alignments: (Bits) Value SEQ24207 96.9 4e-17 seq192303 91.5 2e-15 >SEQ24207 Length=10468 Score = 96.9 bits (106), Expect = 4e-17 Identities = 198/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 389 CTGGAGAGCGGGGCAACACTAAGTGAAGTTGCCCGGGCATCTCCCGAAGTATTTATAAGA 448 ||| | ||||| | || | | ||| |||||||||||| |||| |||| ||||||| Sbjct 6522 CTGAACAGCGGTTCCTCAATGACTGAGCTTGCCCGGGCATATCCCTCTGTATATATAAGA 6581 Query 449 TATGGGAGGGGTTTGCGGGATTAT---ATGAATGTAAGAGGATTGGTCAAACCCCGAGAT 505 ||||||| ||| || || || || | || | | |||| || ||||| Sbjct 6582 TATGGGATGGGCCTGATAGACTACGTCATCACTGCACAA---TTGGCTAAGATGAGAGAT 6638 Query 506 TTTAAGACAGAAGTTATTGTTTTAGTGGGCGAGCCCGGTTCGGGAAAGTCCAAGTATGCT 565 || || || || || ||| | || || || | || ||| |||| | | Sbjct 6639 TTCAAAACTGATGTACATGTGATCACAGGAATTCCGGGGTGTGGCAAGAGTAAGTTTTGT 6698 Query 566 AATGAGCTGCCCGGTTCTAAGTACTGGAAGCCACGCGGGCAGTGGTGGGATGGGTATAAT 625 | ||| ||| ||| || |||||||| || | || |||||||||||||||||| | Sbjct 6699 AGTGAACTGGATGGTGACAAATACTGGAAACCCCATGGAAAGTGGTGGGATGGGTATACT 6758 Query 626 GGAGAGGATATTGTTGTATTAGATGATTTTTATGGATGGGTCCCCTATGATGA 678 ||| | || |||||| |||| |||||||||||||||||| | || | |||||| Sbjct 6759 GGACAAGAGATTGTTATATTGGATGATTTTTATGGATGGATACCATTTGATGA 6811 >seq192303 Length=6807 Score = 91.5 bits (100), Expect = 2e-15 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 584 AAGTACTGGAAGCCACGCGGGCAGTGGTGGGATGGGTATAATGGAGAGGATATTGTTGTA 643 ||||||||||| || || || ||||||||||||| || | |||| | || ||||| || Sbjct 160 AAGTACTGGAAACCGCGGGGAAAGTGGTGGGATGGATACACTGGACAAGAGATTGTGATA 219 Query 644 TTAGATGATTTTTATGGATGGGTCCCCTATGATGA 678 || ||||||| |||||| ||| |||||| |||||| Sbjct 220 TTGGATGATTATTATGGTTGGCTCCCCTTTGATGA 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5517707503640