Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq683 93.3 1e-15 >seq683 Length=370791 Score = 93.3 bits (102), Expect = 1e-15 Identities = 167/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 4189 GGACAAATATGGGACAAAGAACTAGATCTTGAACACAAACCTAGACTTCACATAA-CTGC 4247 |||||| |||||||||| | ||| || | |||||||| | | | |||| || ||| Sbjct 98051 GGACAAGTATGGGACAAGAGTCCAGACCTAGCTCACAAACCGACAATACACACAAACTGT 97992 Query 4248 TCCATTTGTTTGTAAAAACAATGCACCTGGACAAATGTTGGTTAGATTAGGACCAAACCT 4307 | ||| | ||| | |||||| |||| ||||||||||| |||| | || | | ||||| Sbjct 97991 AAC-TTTATCTGTCATAACAATCCACCAGGACAAATGTTTGTTAAACTACTAGCTAACCT 97933 Query 4308 AACTGACCAATATGATCCAAACGGAGCCACACTTTCTAGAATTGTTACATACGGTACATT 4367 || || |||| ||| ||| || || | || | |||| | ||||| | | || Sbjct 97932 CACAGATGAATACAATCACAACACAGACAGCATATCAACAATTATAACATATGCCAACTT 97873 Query 4368 TTTCTGGAAAGGAAAACTAACCATGAGAGCAAAACTTAGAGCTAACACCAC-TTGGAAC 4425 ||||| | || ||||||||||| ||| ||||| ||||| | ||| || |||||| Sbjct 97872 CATCTGGCAGGGTAAACTAACCATCCGAGGCAAACTAAGAGC-ACCACAACAATGGAAC 97815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16355442402800