Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_001662.1 Length=4801 Score E Sequences producing significant alignments: (Bits) Value seq683 77.0 1e-10 >seq683 Length=370791 Score = 77.0 bits (84), Expect = 1e-10 Identities = 113/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 3947 TGCTCAAGACAACGTTGGTCCTGTATACCCGTGGGGACAGATATGGGACAAGAAACCTCA 4006 |||||| || || ||| || ||| || |||||||| |||||||||||| || | Sbjct 98085 TGCTCAGGAAGACTATGGGCCAAAATATCCATGGGGACAAGTATGGGACAAGAGTCCAGA 98026 Query 4007 TATGGATCACAAACCTAGCATGAACAACAACGCTCCATTTGTATGTAAAAACAACCCTCC 4066 | | ||||||||| | || ||| ||| | ||| | ||| | ||||| || || Sbjct 98025 CCTAGCTCACAAACCGACAATACACACAAACTGTAACTTTATCTGTCATAACAATCCACC 97966 Query 4067 AGGTCAACTCTTTGTTAAACTAACAGAAAACCTCACTGAT 4106 ||| ||| | |||||||||||| || |||||||| ||| Sbjct 97965 AGGACAAATGTTTGTTAAACTACTAGCTAACCTCACAGAT 97926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15242479173200