Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_025825.1 Length=4928 Score E Sequences producing significant alignments: (Bits) Value seq683 102 3e-18 >seq683 Length=370791 Score = 102 bits (112), Expect = 3e-18 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 3977 ATACCCATGGGGACAAGTATGGGACAAGAAACCTGACATGGATCACAAACCTAGTATGAA 4036 ||| ||||||||||||||||||||||||| || ||| | | ||||||||| | || | Sbjct 98061 ATATCCATGGGGACAAGTATGGGACAAGAGTCCAGACCTAGCTCACAAACCGACAATACA 98002 Query 4037 CAACAACGCTCCCTTTGTATGTAAAAACAACCCTCCGGGTCAACTCTTTGTTAAACTAAC 4096 || ||| | |||| | ||| | ||||| || || || ||| | |||||||||||| Sbjct 98001 CACAAACTGTAACTTTATCTGTCATAACAATCCACCAGGACAAATGTTTGTTAAACTACT 97942 Query 4097 AGAAAACCTCACTGATGTATTCAA 4120 || |||||||| |||| || ||| Sbjct 97941 AGCTAACCTCACAGATGAATACAA 97918 Score = 96.9 bits (106), Expect = 1e-16 Identities = 203/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 2766 GATAGTAACGCTTGGGGCGTATGGATGAGTCCTAAAGACTTTCAACAGATGAAAACACTA 2825 ||| |||| |||||||| || ||||||| ||| || || ||||| ||| ||| || Sbjct 99169 GATTGTAATGCTTGGGGTGTTTGGATGAATCCAGGTGAATTCCAACATATGTCTACAATA 99110 Query 2826 TGTAGTGAAATTGAGTTGGTTACTTTGGAACAAGAAATAGACAATGTAACTATAAAAACT 2885 ||| | || | |||| | | | |||||| | ||| | || | || |||||| Sbjct 99109 TGTGAAAACATAAACTTGGACAGTCTAGAACAAAACATACATTCCTTATCCATCAAAACT 99050 Query 2886 GTAACAGAAACCAACCAAGGTAATGCATCTACAAAGCAATTTAACAATGATTTAACTGCA 2945 ||||| |||| ||||| | | ||||| |||| |||||||||| | | ||| Sbjct 99049 GTAACTGAAATAGGACAAGGAGCAGAAAAAACAAAACAATATAACAATGATCTTATAGCA 98990 Query 2946 TCTTTACAGGTTGCTTTGGATACTAACAACATATTGCCATATACTCCAGCTGC-GCCATT 3004 || | || ||| | || | ||||| ||| | ||||||||||| ||||| | || Sbjct 98989 TCAATGGGTGTAGCTGTAGACTCAAACAATATACTACCATATACTCCTGCTGCAGGCA-G 98931 Query 3005 AGGGGAAACACTAGGCTTTGTTCCTTGGAGAGCAACCAAACCAACCCAATATAGATACTA 3064 || ||||| |||| ||| || ||| ||||||| || | || |||| |||||||| Sbjct 98930 AGATGAAACTTTAGGATTTTACCCATGGCGAGCAACAAACCTAAAACAATGGAGATACTA 98871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15648646788600