Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_032097.1 Length=4284 Score E Sequences producing significant alignments: (Bits) Value seq16269 224 3e-55 >seq16269 Length=3884 Score = 224 bits (248), Expect = 3e-55 Identities = 370/532 (70%), Gaps = 4/532 (1%) Strand=Plus/Minus Query 1534 TTTTATCAATGGGTCACAAAAGCCAATCTCaaaaaaaaTACATTAGTACTATGGGGTCCT 1593 || ||| |||| |||| ||| || ||| ||||| || | ||||| | ||||| Sbjct 2509 TTCTATTTATGGATCACTAAACAGCATACCAAGAAAAACACGATTGTACTCTTTGGTCCG 2450 Query 1594 ACAAATACAGGAAAAAGTGCATTCATCTCAGGATTTAAACAATGCATTAATTGGGGAGAA 1653 | || || || ||||||||||| || || ||||| || |||| ||| ||||||||| Sbjct 2449 TCGAACACGGGGAAAAGTGCATTTATTTCGGGATTAAAGAAATGTATTTCATGGGGAGAA 2390 Query 1654 GTAGTAAATAGCAACACATTTGCTTTTGAAGGACTCATCAATAATCAATTCGGTATTTGG 1713 | ||||| |||||| ||||| |||||||| | | ||||| | || | ||| Sbjct 2389 ATCGTAAACTCCAACACGTTTGCATTTGAAGGGTTGGTAGATAATATCATAGGAGTATGG 2330 Query 1714 GAAGAACCATTAATCTCACCAGAATTAGCAGAAAAAGCTAAACAAGTATTTGAAGGCATG 1773 ||||| ||||||||| |||||| | ||||||||||| ||||| | || ||||||||| Sbjct 2329 GAAGAGCCATTAATCAGTCCAGAACTGGCAGAAAAAGCAAAACAGATTTTCGAAGGCATG 2270 Query 1774 GAAACTTCCATTCCTGTCAAATACAGGAAACCAGTAAAATTACCACGCACACCCATCATA 1833 ||| || ||| | ||||| | |||||| | ||| | ||||||| ||| ||||| Sbjct 2269 GAATGCAGTATACCTATAAAATATAAAAAACCAATTAAACTGCCACGCATACCAATCATT 2210 Query 1834 ATAACTACAAATCATGCTCCCTGGAGATTTTGCACTAAAGAAGAAGAAATGTTTAAAAAT 1893 || ||||| ||||| | || |||||||||||||| | ||| || |||||| | ||| Sbjct 2209 ATGACTACTAATCACCCACCGTGGAGATTTTGCACACACGAACAAACCATGTTTGAGAAT 2150 Query 1894 AGAATGTTTATTTTTAACTGGAACCATAACATGCATAACAC--CACTTTCACTTACAGAG 1951 |||||||| || || || | | || ||||| || | | || ||| | ||| Sbjct 2149 AGAATGTTCATATTCAATTTCATGCACGACATGATGTACCCTGAATTTACACCT--AGAA 2092 Query 1952 TTAGTGAATATAGCTGCGAATGCCGAATTTGTAAAACAAGTCGAAGCAGCGAGACTACTA 2011 || ||| |||||||||||||| ||| ||| ||| || ||||||||| ||| Sbjct 2091 CAAGCGAACATAGCTGCGAATGCTATTATTGCCAAAGAAGCAGAGGCAGCGAGATGGCTA 2032 Query 2012 CTAGTGGGGGAACAACTAGCAGCTTGCCGGGAGGAGAACAACCCATACAACA 2063 || | |||| || | | ||| | | || |||||||| ||||||| Sbjct 2031 CTGACCATGCAACAGCTGGAGACATGCAGACAAGACAACAACCCCTACAACA 1980 Score = 158 bits (174), Expect = 3e-35 Identities = 202/275 (73%), Gaps = 9/275 (3%) Strand=Plus/Minus Query 3635 ACCGAATATGAACAATACAAATATCCACCCACACAATGCTTTCTTAAAGGTGTACCATTA 3694 || |||||| ||||||||||||| ||||| |||||||| || | ||||| |||| ||| Sbjct 444 ACAGAATATCAACAATACAAATACCCACCAACACAATGGTTCATAAAAGGACTACCTTTA 385 Query 3695 TTCGACGACAATGGCACACACGTAGAAACACTCACTCAAGGATGCTTCAGAGTCACACTA 3754 || |||| || |||||||||||||||| || |||||||| | | | | ||| || Sbjct 384 TTTGACGCAGCAGGAACACACGTAGAAACACAAACACAAGGATGTGTAAAAATAACAATA 325 Query 3755 CACCTAGCAGCCAAGAAACGAAGAAGCAGAATATTCGCTCCAACATGGGGACCACTAGCA 3814 || | || ||| |||||||||||| |||| ||| ||||||||||||||| | Sbjct 324 CATATCCAAGGCAAAAAACGAAGAAGCGCCATATACGCACCAACATGGGGACCATTCAAC 265 Query 3815 TGGACACAAATATACTCAATTGAC--GC-ACCAAGAGCA---CCAAATGCA---GTCAGA 3865 |||| ||| |||| ||| ||| || | ||||| || | ||| || || || Sbjct 264 TGGAGACACTTATATGCAAGCGACAAGCAATCAAGAACATTCCAAAACTCATATGTACGA 205 Query 3866 TATAGAACAGGAGGAGCAAGAAGAACATGGACAAA 3900 || | ||||||||||||||||||||| |||||| Sbjct 204 TACCGCACAGGAGGAGCAAGAAGAACAATGACAAA 170 Score = 120 bits (132), Expect = 8e-24 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 2780 ACCGGATGGCATATAATACCAACTATACTATGGAAACACTTCACTACTCCCAAACAATGG 2839 || ||||||||||||||||||| || ||||||| |||| | || || || ||||||||| Sbjct 1311 ACAGGATGGCATATAATACCAAACATGCTATGGAGACACGTAACAACACCTAAACAATGG 1252 Query 2840 TGTAATTTCATGATTAAATATGAAGCTTATACAGTAAAAGGATACACTGTCACTGTATAT 2899 | ||| || || ||||| || |||||| | | | | |||||| Sbjct 1251 GCAGAATTCCAAATACAAACAGAAGCATACCACGTAAAAAGCATTAAAGCGATCGTATAT 1192 Query 2900 AATCCTATACCTATGACACAACAACTCGCTATTCAAGGCACCACAGCATTTACAGCATTT 2959 || || |||| |||||| |||| | || || ||||| | ||||| |||||||||||| Sbjct 1191 AACCCAGTACCAATGACAACACAATTAGCAATCCAAGGAAGCACAGTATTTACAGCATTC 1132 Query 2960 AATAACACCATATATACATTAGGA 2983 |||||||||||||| |||||||| Sbjct 1131 AATAACACCATATACTCATTAGGA 1108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13589025179800